Variant report

Variant	rs58229352
Chromosome Location	chr6:13138937-13138938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11963505	0.83[EUR][1000 genomes]
rs11964894	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11968523	0.83[EUR][1000 genomes]
rs16873636	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58465520	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59859761	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73723394	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13128200-13139600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:13128400-13139000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:13132600-13139200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:13132800-13153000	Weak transcription	Aorta	Aorta
5	chr6:13136800-13139200	Enhancers	Fetal Heart	heart
6	chr6:13137000-13139400	Weak transcription	Brain Anterior Caudate	brain
7	chr6:13137000-13141200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:13137800-13139000	Enhancers	Left Ventricle	heart
9	chr6:13137800-13139000	Enhancers	Pancreas	Pancrea
10	chr6:13138600-13139000	Enhancers	Right Ventricle	heart
11	chr6:13138600-13143200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:13138800-13143800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:13138800-13144400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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