Variant report

Variant	rs16873957
Chromosome Location	chr5:44313023-44313024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11951506	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11951940	0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11953938	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16873860	1.00[AMR][1000 genomes]
rs16873886	1.00[AMR][1000 genomes]
rs16900182	1.00[AMR][1000 genomes]
rs17234015	1.00[AMR][1000 genomes]
rs17234036	1.00[AMR][1000 genomes]
rs17234219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17234226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17234247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17234254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17234303	1.00[AMR][1000 genomes]
rs17234324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17234548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17234555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3901897	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv4816	chr5:44307345-44352012	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44301200-44316000	Weak transcription	Pancreas	Pancrea
2	chr5:44302800-44331800	Weak transcription	Fetal Stomach	stomach
3	chr5:44306000-44327800	Weak transcription	Fetal Lung	lung
4	chr5:44310200-44327000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:44312600-44315000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:44312600-44317600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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