Variant report

Variant	rs3901897
Chromosome Location	chr5:44261306-44261307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11951506	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11951940	1.00[AMR][1000 genomes]
rs11953938	1.00[AMR][1000 genomes]
rs16873860	1.00[AMR][1000 genomes]
rs16873886	1.00[AMR][1000 genomes]
rs16873957	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16900182	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17234015	1.00[AMR][1000 genomes]
rs17234036	1.00[AMR][1000 genomes]
rs17234219	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17234226	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17234247	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17234254	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17234303	1.00[AMR][1000 genomes]
rs17234324	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17234548	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17234555	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019047	chr5:43939693-44301657	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:44257800-44270400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:44261000-44261400	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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