Variant report

Variant	rs16874155
Chromosome Location	chr6:13428803-13428804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13428050..13431790-chr6:13485555..13488109,3	MCF-7	breast:
2	chr6:13423766..13425699-chr6:13428540..13431249,2	K562	blood:

Variant related genes	Relation type
ENSG00000145990	Chromatin interaction
ENSG00000187461	Chromatin interaction
ENSG00000237786	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12527593	1.00[CHB][hapmap]
rs12528480	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs16874132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16874136	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16874138	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16874139	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16874142	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16874145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16874149	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16874152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16874153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1992387	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs511996	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs56676493	0.88[EUR][1000 genomes]
rs60004245	0.86[ASN][1000 genomes]
rs61017983	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6910199	0.90[EUR][1000 genomes]
rs6914294	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs6926083	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs6931031	1.00[CHB][hapmap]
rs6936420	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs73366931	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73366933	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73366936	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73366937	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73366941	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73366945	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73366948	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73366949	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73366951	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73366952	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73366960	0.88[EUR][1000 genomes]
rs73366970	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73725822	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7739372	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7740220	0.90[EUR][1000 genomes]
rs7740298	1.00[CHB][hapmap]
rs7758003	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9370100	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs9474179	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13419400-13429800	Enhancers	Fetal Lung	lung
2	chr6:13420200-13430000	Enhancers	Fetal Stomach	stomach
3	chr6:13422200-13432800	Weak transcription	NHDF-Ad	bronchial
4	chr6:13423400-13432200	Weak transcription	A549	lung
5	chr6:13423800-13431400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:13423800-13431400	Weak transcription	Brain Germinal Matrix	brain
7	chr6:13423800-13433000	Weak transcription	Pancreas	Pancrea
8	chr6:13424000-13429000	Weak transcription	Aorta	Aorta
9	chr6:13424000-13429200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:13425200-13429600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:13425200-13430000	Enhancers	Lung	lung
12	chr6:13425200-13430200	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:13425200-13431200	Enhancers	Left Ventricle	heart
14	chr6:13425200-13432200	Enhancers	Right Ventricle	heart
15	chr6:13425400-13430200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:13425800-13429800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:13426000-13429800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:13426000-13430400	Flanking Active TSS	GM12878-XiMat	blood
19	chr6:13426200-13430000	Enhancers	Fetal Thymus	thymus
20	chr6:13426400-13429800	Enhancers	Fetal Heart	heart
21	chr6:13426600-13429600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:13426600-13431200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr6:13426800-13429200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:13426800-13429400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:13426800-13429400	Weak transcription	NHEK	skin
26	chr6:13426800-13431600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:13426800-13431600	Weak transcription	NHLF	lung
28	chr6:13426800-13431800	Weak transcription	NH-A	brain
29	chr6:13427000-13429400	Weak transcription	Esophagus	oesophagus
30	chr6:13427000-13429600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:13427000-13429600	Weak transcription	HMEC	breast
32	chr6:13427000-13432000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:13427000-13432800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:13427400-13429400	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr6:13427400-13429600	Enhancers	Placenta	Placenta
36	chr6:13427600-13429600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:13427600-13429600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
38	chr6:13427600-13429800	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr6:13427600-13429800	Bivalent Enhancer	Fetal Muscle Leg	muscle
40	chr6:13427600-13430000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:13427800-13429600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
42	chr6:13427800-13432200	Weak transcription	Liver	Liver
43	chr6:13428000-13429000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr6:13428000-13429000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
45	chr6:13428000-13429000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr6:13428000-13429000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr6:13428000-13429000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr6:13428000-13429200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr6:13428000-13429200	Weak transcription	Brain Hippocampus Middle	brain
50	chr6:13428000-13429400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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