Variant report

Variant	rs7739372
Chromosome Location	chr6:13436291-13436292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13435465..13437334-chr6:13573444..13576016,2	MCF-7	breast:
2	chr6:13430517..13435196-chr6:13435654..13440896,5	K562	blood:

Variant related genes	Relation type
ENSG00000124523	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12527593	1.00[CHB][hapmap]
rs12528480	1.00[CHB][hapmap]
rs16874132	1.00[CHB][hapmap]
rs16874136	1.00[CHB][hapmap]
rs16874138	1.00[CHB][hapmap]
rs16874139	1.00[CHB][hapmap]
rs16874142	1.00[CHB][hapmap]
rs16874145	1.00[CHB][hapmap]
rs16874152	1.00[CHB][hapmap]
rs16874153	1.00[CHB][hapmap]
rs16874155	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1992387	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2059804	1.00[JPT][hapmap]
rs60004245	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914294	1.00[CHB][hapmap]
rs6926083	1.00[CHB][hapmap]
rs6931031	1.00[CHB][hapmap]
rs7740298	1.00[CHB][hapmap]
rs9357728	0.85[ASN][1000 genomes]
rs9370100	1.00[CHB][hapmap]
rs9474179	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13428800-13451200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:13429800-13436600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:13429800-13436600	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:13430000-13436600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:13430000-13437800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:13430000-13445000	Weak transcription	NHEK	skin
7	chr6:13430800-13436400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr6:13432200-13438200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:13432600-13445400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:13432800-13438200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:13433000-13438200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:13433000-13454000	Weak transcription	Hela-S3	cervix
13	chr6:13433200-13437000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:13433200-13437000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:13433200-13437200	Weak transcription	Thymus	Thymus
16	chr6:13433200-13437200	Weak transcription	K562	blood
17	chr6:13433200-13440000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:13433200-13440200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:13433200-13442000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:13433200-13445200	Weak transcription	Brain Angular Gyrus	brain
21	chr6:13433400-13436800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:13433600-13445400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:13434200-13436800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:13434200-13441000	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:13434400-13436600	Weak transcription	Primary B cells from cord blood	blood
26	chr6:13434400-13437200	Weak transcription	Fetal Thymus	thymus
27	chr6:13434400-13439400	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr6:13434400-13440600	Weak transcription	Lung	lung
29	chr6:13434400-13441000	Weak transcription	Brain Anterior Caudate	brain
30	chr6:13434400-13445200	Weak transcription	Fetal Heart	heart
31	chr6:13434400-13445200	Weak transcription	Pancreas	Pancrea
32	chr6:13434400-13448000	Weak transcription	Esophagus	oesophagus
33	chr6:13434800-13436400	Enhancers	HepG2	liver
34	chr6:13434800-13437400	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr6:13435000-13436800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:13435000-13437000	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr6:13435000-13438000	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr6:13435200-13436400	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr6:13435200-13436600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:13435200-13437600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:13435200-13437600	Enhancers	Liver	Liver
42	chr6:13435600-13436800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:13435600-13439200	Enhancers	Fetal Lung	lung
44	chr6:13435600-13440600	Weak transcription	Adipose Nuclei	Adipose
45	chr6:13435600-13445000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr6:13435800-13436400	Enhancers	A549	lung
47	chr6:13435800-13436400	Flanking Active TSS	GM12878-XiMat	blood
48	chr6:13435800-13437000	Enhancers	Primary T cells from cord blood	blood
49	chr6:13435800-13438400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:13436000-13437000	Weak transcription	Primary T cells fromperipheralblood	blood

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