Variant report

Variant	rs16875207
Chromosome Location	chr8:107876627-107876628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16875205	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16875208	0.99[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875210	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16875214	0.99[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs16875215	0.99[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs16875222	0.92[AFR][1000 genomes]
rs16875225	0.96[ASN][1000 genomes]
rs16875259	0.83[AFR][1000 genomes]
rs2981253	0.87[ASN][1000 genomes]
rs3018932	0.80[ASN][1000 genomes]
rs55749843	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56126658	0.89[AFR][1000 genomes]
rs59832264	0.93[ASN][1000 genomes]
rs62518274	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62518283	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62518285	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs62518286	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs62518290	0.85[ASN][1000 genomes]
rs62518291	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs62518294	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs62518295	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7009407	0.93[ASN][1000 genomes]
rs72510103	0.92[AFR][1000 genomes]
rs73702462	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7818935	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7824454	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7828888	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7843794	0.99[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv465757	chr8:107846295-107893477	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv611848	chr8:107846295-107893477	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv497805	chr8:107852509-108368371	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107870800-107877600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:107875400-107876800	Enhancers	NHDF-Ad	bronchial
3	chr8:107875800-107878200	Enhancers	NHEK	skin
4	chr8:107875800-107878600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:107875800-107878600	Enhancers	Osteobl	bone
6	chr8:107876000-107876800	Flanking Active TSS	A549	lung
7	chr8:107876000-107877000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr8:107876000-107877600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:107876000-107877600	Enhancers	HMEC	breast
10	chr8:107876000-107878200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr8:107876000-107878200	Enhancers	HSMM	muscle
12	chr8:107876000-107878400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:107876200-107876800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:107876200-107876800	Weak transcription	NH-A	brain
15	chr8:107876200-107877600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr8:107876200-107878400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:107876400-107877600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:107876400-107878200	Active TSS	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links