Variant report

Variant	rs16875446
Chromosome Location	chr8:107993651-107993652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107992879..107994414-chr8:107998653..108000399,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs16875389	1.00[ASN][1000 genomes]
rs16875405	1.00[ASN][1000 genomes]
rs16875425	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16875432	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16875434	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16875435	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875449	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55650515	1.00[ASN][1000 genomes]
rs55864521	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55898208	1.00[ASN][1000 genomes]
rs55934744	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55985213	1.00[ASN][1000 genomes]
rs56370064	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57066864	1.00[ASN][1000 genomes]
rs57124302	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57226667	1.00[ASN][1000 genomes]
rs57686955	1.00[ASN][1000 genomes]
rs57904969	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58180593	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs58384262	0.93[ASN][1000 genomes]
rs58449156	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs58519081	1.00[ASN][1000 genomes]
rs58538201	1.00[ASN][1000 genomes]
rs59141056	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59297130	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59392221	1.00[ASN][1000 genomes]
rs59747457	1.00[ASN][1000 genomes]
rs60105649	1.00[ASN][1000 genomes]
rs60602031	1.00[ASN][1000 genomes]
rs60683190	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61080146	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61170285	0.93[ASN][1000 genomes]
rs61467464	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73699628	0.93[ASN][1000 genomes]
rs73699630	1.00[ASN][1000 genomes]
rs73699631	1.00[ASN][1000 genomes]
rs73699635	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73699636	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73699639	1.00[ASN][1000 genomes]
rs73699641	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73699642	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73699644	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73699645	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73699647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73699648	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73699649	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73699668	1.00[ASN][1000 genomes]
rs73699674	1.00[ASN][1000 genomes]
rs73699699	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029202	chr8:107796289-108384241	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539712	chr8:107796289-108384241	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1034210	chr8:107796489-108384102	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539713	chr8:107796489-108384102	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv529383	chr8:107796490-108368465	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv915821	chr8:107796490-108393008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv916496	chr8:107813722-108338822	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028726	chr8:107816841-108392547	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv497805	chr8:107852509-108368371	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv465759	chr8:107948846-107993651	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv611850	chr8:107948846-107993651	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107987400-107998400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:107987800-107995400	Weak transcription	Aorta	Aorta
3	chr8:107992200-107994000	Enhancers	Fetal Intestine Large	intestine
4	chr8:107993000-107995200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:107993200-107993800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:107993200-107995200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:107993400-107995200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:107993600-107994200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:107993600-107994800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr8:107993600-107995200	Weak transcription	Fetal Intestine Small	intestine

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