Variant report

Variant	rs16877197
Chromosome Location	chr7:11852106-11852107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10239072	0.83[EUR][1000 genomes]
rs12670319	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12673487	0.83[EUR][1000 genomes]
rs17149879	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17165240	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17165243	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2355085	0.82[EUR][1000 genomes]
rs2883592	0.83[EUR][1000 genomes]
rs55668447	0.80[EUR][1000 genomes]
rs57417976	0.84[EUR][1000 genomes]
rs57623191	0.82[EUR][1000 genomes]
rs57822376	0.84[EUR][1000 genomes]
rs58325377	0.86[EUR][1000 genomes]
rs60510202	0.85[EUR][1000 genomes]
rs62435372	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6460843	0.84[EUR][1000 genomes]
rs66894282	0.82[EUR][1000 genomes]
rs7794473	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11850000-11852800	Active TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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