Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10239072	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12670319	0.80[ASN][1000 genomes]
rs12673487	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1526518	0.83[EUR][1000 genomes]
rs16877197	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17149879	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17165240	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17165243	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2355085	0.89[EUR][1000 genomes]
rs2355095	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2883592	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55668447	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55709709	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56020952	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57417976	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57623191	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57822376	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58325377	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60510202	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62433414	0.80[EUR][1000 genomes]
rs6460843	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66894282	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7794473	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11839400-11839800	Active TSS	A549	lung

Quick Search: