Variant report

Variant	rs1687730
Chromosome Location	chr10:27904196-27904197
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1168571	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1168572	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1168574	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1168582	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1168583	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1168585	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1168586	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1168588	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1168589	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1687722	0.93[EUR][1000 genomes]
rs1687723	0.94[EUR][1000 genomes]
rs1687724	0.94[EUR][1000 genomes]
rs1687731	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687732	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1687733	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1687735	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1687736	0.86[EUR][1000 genomes]
rs1690678	0.90[EUR][1000 genomes]
rs1690684	0.93[EUR][1000 genomes]
rs1690685	0.93[EUR][1000 genomes]
rs1690686	0.94[EUR][1000 genomes]
rs2453213	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2491324	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2505134	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2815539	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27899400-27904200	Weak transcription	Esophagus	oesophagus
2	chr10:27902000-27908200	Weak transcription	Fetal Stomach	stomach
3	chr10:27903400-27904400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:27903400-27905800	Enhancers	Fetal Muscle Leg	muscle
5	chr10:27903600-27904400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr10:27903600-27904400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:27903600-27904400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr10:27903600-27904400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:27903600-27904400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:27903600-27904400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr10:27903600-27904400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:27903600-27904400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr10:27903600-27904400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:27903600-27909400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:27903800-27904200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr10:27903800-27904400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:27903800-27904400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:27903800-27904400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr10:27903800-27904400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr10:27903800-27904400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:27903800-27904400	Enhancers	Gastric	stomach
22	chr10:27904000-27904600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr10:27904000-27904800	Enhancers	Adipose Nuclei	Adipose
24	chr10:27904000-27913800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links