Variant report

Variant	rs1690678
Chromosome Location	chr10:27930818-27930819
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10829292	0.81[ASN][1000 genomes]
rs10829294	0.95[ASN][1000 genomes]
rs10829296	0.93[ASN][1000 genomes]
rs10829302	0.95[ASN][1000 genomes]
rs10829304	0.94[ASN][1000 genomes]
rs10829305	0.89[ASN][1000 genomes]
rs11015923	0.99[ASN][1000 genomes]
rs11015927	0.99[ASN][1000 genomes]
rs11015928	1.00[ASN][1000 genomes]
rs11015935	0.97[ASN][1000 genomes]
rs11015936	0.95[ASN][1000 genomes]
rs11015938	0.93[ASN][1000 genomes]
rs1168571	0.92[EUR][1000 genomes]
rs1168572	0.92[EUR][1000 genomes]
rs1168574	0.92[EUR][1000 genomes]
rs1168582	0.92[EUR][1000 genomes]
rs1168583	0.89[EUR][1000 genomes]
rs1168585	0.92[EUR][1000 genomes]
rs1168586	0.90[EUR][1000 genomes]
rs1168588	0.92[EUR][1000 genomes]
rs1168589	0.92[EUR][1000 genomes]
rs12217955	0.97[ASN][1000 genomes]
rs12219955	0.97[ASN][1000 genomes]
rs12220217	0.97[ASN][1000 genomes]
rs12572531	0.97[ASN][1000 genomes]
rs1687722	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1687723	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1687724	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1687728	0.81[ASN][1000 genomes]
rs1687730	0.90[EUR][1000 genomes]
rs1687731	0.90[EUR][1000 genomes]
rs1687732	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1687733	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1687735	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1687736	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1690684	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1690685	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1690686	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1690688	0.83[ASN][1000 genomes]
rs1690689	0.82[ASN][1000 genomes]
rs1690690	0.85[ASN][1000 genomes]
rs2451928	0.84[ASN][1000 genomes]
rs2453213	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2491324	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2505134	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2815539	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2934710	0.84[ASN][1000 genomes]
rs72629767	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv894986	chr10:27904646-27957785	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3362263	chr10:27929908-27934180	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27927200-27932200	Weak transcription	Osteobl	bone
2	chr10:27927400-27932000	Weak transcription	HSMMtube	muscle
3	chr10:27927800-27932200	Weak transcription	Adipose Nuclei	Adipose

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