Variant report

Variant	rs1690689
Chromosome Location	chr10:27903968-27903969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10458687	0.89[ASN][1000 genomes]
rs10458709	0.88[ASN][1000 genomes]
rs10741138	0.84[ASN][1000 genomes]
rs10764725	0.91[ASN][1000 genomes]
rs10829289	0.90[ASN][1000 genomes]
rs10829290	0.90[ASN][1000 genomes]
rs10829291	0.87[ASN][1000 genomes]
rs10829292	0.89[ASN][1000 genomes]
rs10829293	0.89[ASN][1000 genomes]
rs10829294	0.85[ASN][1000 genomes]
rs11015908	0.91[ASN][1000 genomes]
rs11015923	0.83[ASN][1000 genomes]
rs11015927	0.83[ASN][1000 genomes]
rs11015928	0.82[ASN][1000 genomes]
rs12572531	0.83[ASN][1000 genomes]
rs1687728	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1687729	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1690678	0.82[ASN][1000 genomes]
rs1690688	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1690690	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2451928	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2934710	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27899400-27904200	Weak transcription	Esophagus	oesophagus
2	chr10:27902000-27908200	Weak transcription	Fetal Stomach	stomach
3	chr10:27903400-27904400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:27903400-27905800	Enhancers	Fetal Muscle Leg	muscle
5	chr10:27903600-27904000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:27903600-27904400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr10:27903600-27904400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:27903600-27904400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr10:27903600-27904400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:27903600-27904400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:27903600-27904400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr10:27903600-27904400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr10:27903600-27904400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr10:27903600-27904400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:27903600-27909400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:27903800-27904200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr10:27903800-27904400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:27903800-27904400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:27903800-27904400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr10:27903800-27904400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr10:27903800-27904400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:27903800-27904400	Enhancers	Gastric	stomach

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