Variant report

Variant	rs10458687
Chromosome Location	chr10:27902757-27902758
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10458709	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10741138	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10764721	0.92[EUR][1000 genomes]
rs10764722	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10764723	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10764724	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10764725	0.98[ASN][1000 genomes]
rs10764726	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1077755	0.91[EUR][1000 genomes]
rs10829288	0.92[EUR][1000 genomes]
rs10829289	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10829290	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10829291	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10829292	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10829293	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829294	0.81[ASN][1000 genomes]
rs11015902	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11015908	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015909	0.84[EUR][1000 genomes]
rs11015923	0.80[ASN][1000 genomes]
rs11015927	0.80[ASN][1000 genomes]
rs1107306	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1107307	0.88[EUR][1000 genomes]
rs1107308	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12244013	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12264344	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12572531	0.80[ASN][1000 genomes]
rs1687728	0.96[ASN][1000 genomes]
rs1690688	0.91[ASN][1000 genomes]
rs1690689	0.89[ASN][1000 genomes]
rs1690690	0.92[ASN][1000 genomes]
rs2020977	0.86[EUR][1000 genomes]
rs2368244	0.92[EUR][1000 genomes]
rs2451928	0.91[ASN][1000 genomes]
rs2934710	0.91[ASN][1000 genomes]
rs7478380	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs749333	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs882048	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs882049	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs882050	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27899400-27904200	Weak transcription	Esophagus	oesophagus
2	chr10:27901400-27903600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:27901400-27903800	Weak transcription	Gastric	stomach
4	chr10:27901800-27903400	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:27902000-27903600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:27902000-27908200	Weak transcription	Fetal Stomach	stomach

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