Variant report

Variant	rs10741138
Chromosome Location	chr10:27900615-27900616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10458687	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10458709	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10764721	0.94[EUR][1000 genomes]
rs10764722	0.94[EUR][1000 genomes]
rs10764723	0.94[EUR][1000 genomes]
rs10764724	0.94[EUR][1000 genomes]
rs10764725	0.91[ASN][1000 genomes]
rs10764726	0.94[EUR][1000 genomes]
rs1077755	0.93[EUR][1000 genomes]
rs10829288	0.94[EUR][1000 genomes]
rs10829289	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10829290	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10829291	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10829292	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10829293	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11015902	0.94[EUR][1000 genomes]
rs11015908	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015909	0.82[EUR][1000 genomes]
rs1107306	0.94[EUR][1000 genomes]
rs1107307	0.90[EUR][1000 genomes]
rs1107308	0.94[EUR][1000 genomes]
rs12244013	0.94[EUR][1000 genomes]
rs12264344	0.94[EUR][1000 genomes]
rs1687728	0.90[ASN][1000 genomes]
rs1690688	0.86[ASN][1000 genomes]
rs1690689	0.84[ASN][1000 genomes]
rs1690690	0.87[ASN][1000 genomes]
rs2020977	0.88[EUR][1000 genomes]
rs2368244	0.94[EUR][1000 genomes]
rs2451928	0.87[ASN][1000 genomes]
rs2934710	0.87[ASN][1000 genomes]
rs7478380	0.94[EUR][1000 genomes]
rs749333	0.94[EUR][1000 genomes]
rs882048	0.93[EUR][1000 genomes]
rs882049	0.94[EUR][1000 genomes]
rs882050	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27899200-27901200	Weak transcription	Gastric	stomach
2	chr10:27899400-27904200	Weak transcription	Esophagus	oesophagus
3	chr10:27900000-27900800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:27900000-27901200	Enhancers	Stomach Mucosa	stomach
5	chr10:27900200-27901600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:27900200-27901800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:27900200-27901800	Enhancers	NHDF-Ad	bronchial
8	chr10:27900200-27902000	Enhancers	Fetal Stomach	stomach
9	chr10:27900400-27900800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:27900400-27900800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:27900400-27901000	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:27900400-27901400	Enhancers	Fetal Lung	lung
13	chr10:27900400-27901600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:27900400-27902000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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