Variant report

Variant	rs1107307
Chromosome Location	chr10:27897769-27897770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10458687	0.88[EUR][1000 genomes]
rs10458709	0.86[EUR][1000 genomes]
rs10741138	0.90[EUR][1000 genomes]
rs10764721	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10764722	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10764723	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10764724	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10764726	0.87[EUR][1000 genomes]
rs1077755	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10829288	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10829289	0.87[EUR][1000 genomes]
rs10829290	0.88[EUR][1000 genomes]
rs10829291	0.88[EUR][1000 genomes]
rs10829292	0.88[EUR][1000 genomes]
rs10829293	0.88[EUR][1000 genomes]
rs11015902	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11015908	0.86[EUR][1000 genomes]
rs1107306	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1107308	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12244013	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12264344	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2020977	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2368244	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7478380	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs749332	0.86[AFR][1000 genomes]
rs749333	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs882048	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs882049	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs882050	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27890200-27899200	Weak transcription	Esophagus	oesophagus
2	chr10:27896400-27897800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:27896400-27898400	Enhancers	Stomach Mucosa	stomach
4	chr10:27896600-27898200	Enhancers	Fetal Intestine Small	intestine
5	chr10:27896600-27898200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr10:27896800-27899000	Weak transcription	Gastric	stomach
7	chr10:27897000-27899800	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:27897200-27897800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr10:27897200-27898000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:27897400-27897800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:27897600-27898000	Enhancers	Duodenum Mucosa	Duodenum
12	chr10:27897600-27898200	Enhancers	Monocytes-CD14+_RO01746	blood

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