Variant report

Variant	rs10829304
Chromosome Location	chr10:27948959-27948960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1002861	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1027342	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10508722	1.00[EUR][1000 genomes]
rs10508724	0.86[EUR][1000 genomes]
rs10764699	0.86[EUR][1000 genomes]
rs10764718	1.00[EUR][1000 genomes]
rs10764719	1.00[EUR][1000 genomes]
rs10826346	0.86[EUR][1000 genomes]
rs10829285	1.00[EUR][1000 genomes]
rs10829286	1.00[EUR][1000 genomes]
rs10829294	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10829296	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10829302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10829305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11006697	1.00[EUR][1000 genomes]
rs11006698	1.00[EUR][1000 genomes]
rs11006699	1.00[EUR][1000 genomes]
rs11006700	1.00[EUR][1000 genomes]
rs11015826	0.86[EUR][1000 genomes]
rs11015832	0.86[EUR][1000 genomes]
rs11015833	0.86[EUR][1000 genomes]
rs11015836	0.83[EUR][1000 genomes]
rs11015840	0.86[EUR][1000 genomes]
rs11015856	0.86[EUR][1000 genomes]
rs11015857	0.86[EUR][1000 genomes]
rs11015858	0.86[EUR][1000 genomes]
rs11015875	0.86[EUR][1000 genomes]
rs11015898	1.00[EUR][1000 genomes]
rs11015923	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11015935	0.97[ASN][1000 genomes]
rs11015936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015942	0.82[AMR][1000 genomes]
rs11015946	1.00[EUR][1000 genomes]
rs11015948	1.00[EUR][1000 genomes]
rs11015957	1.00[EUR][1000 genomes]
rs11015958	0.86[EUR][1000 genomes]
rs11015969	1.00[EUR][1000 genomes]
rs11015973	1.00[EUR][1000 genomes]
rs11015980	1.00[EUR][1000 genomes]
rs11015981	1.00[EUR][1000 genomes]
rs12217955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12218027	1.00[EUR][1000 genomes]
rs12218420	0.86[EUR][1000 genomes]
rs12219258	0.86[EUR][1000 genomes]
rs12219316	0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12219955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12220217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12220463	0.86[EUR][1000 genomes]
rs12257550	0.86[EUR][1000 genomes]
rs12264856	1.00[EUR][1000 genomes]
rs12411785	0.91[AMR][1000 genomes]
rs12411792	0.91[AMR][1000 genomes]
rs12411804	0.86[EUR][1000 genomes]
rs12412077	0.86[AMR][1000 genomes]
rs12569521	1.00[EUR][1000 genomes]
rs12571836	0.86[EUR][1000 genomes]
rs12572531	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1690678	0.94[ASN][1000 genomes]
rs17756134	0.86[EUR][1000 genomes]
rs17756253	0.86[EUR][1000 genomes]
rs1907388	0.86[EUR][1000 genomes]
rs2242356	0.86[EUR][1000 genomes]
rs57812861	1.00[EUR][1000 genomes]
rs59444708	1.00[AFR][1000 genomes]
rs72629759	0.86[EUR][1000 genomes]
rs72629760	0.86[EUR][1000 genomes]
rs72629761	0.86[EUR][1000 genomes]
rs72629762	0.86[EUR][1000 genomes]
rs72629763	0.86[EUR][1000 genomes]
rs72629764	0.86[EUR][1000 genomes]
rs72629766	1.00[EUR][1000 genomes]
rs72629767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72629772	1.00[EUR][1000 genomes]
rs72629774	1.00[EUR][1000 genomes]
rs72629775	1.00[EUR][1000 genomes]
rs72629776	1.00[EUR][1000 genomes]
rs72629777	1.00[EUR][1000 genomes]
rs72629778	1.00[EUR][1000 genomes]
rs72631837	1.00[EUR][1000 genomes]
rs72631838	1.00[EUR][1000 genomes]
rs72631839	1.00[EUR][1000 genomes]
rs7358151	0.86[EUR][1000 genomes]
rs8181307	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv894986	chr10:27904646-27957785	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27933800-27963600	Weak transcription	Ovary	ovary
2	chr10:27941600-27963600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:27947000-27949200	Weak transcription	Right Atrium	heart
4	chr10:27947000-27951000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:27947200-27951400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:27947400-27949400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:27947800-27950400	Enhancers	Osteobl	bone
8	chr10:27947800-27950800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr10:27948000-27949000	Enhancers	HSMM	muscle
10	chr10:27948000-27949200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:27948200-27949600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:27948400-27950800	Weak transcription	NHDF-Ad	bronchial
13	chr10:27948600-27949000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:27948600-27949000	Enhancers	HMEC	breast
15	chr10:27948600-27951000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:27948600-27954200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr10:27948800-27949000	Bivalent Enhancer	HepG2	liver
18	chr10:27948800-27949400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr10:27948800-27949400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr10:27948800-27949400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:27948800-27949600	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr10:27948800-27949600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:27948800-27950600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr10:27948800-27951800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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