Variant report

Variant	rs72629776
Chromosome Location	chr10:28001772-28001773
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28000067..28003479-chr10:28003603..28008037,4	K562	blood:
2	chr10:28000828..28003406-chr10:28003603..28005952,2	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1002861	1.00[EUR][1000 genomes]
rs1027342	1.00[EUR][1000 genomes]
rs10430558	0.81[ASN][1000 genomes]
rs10430568	0.81[ASN][1000 genomes]
rs10508722	1.00[EUR][1000 genomes]
rs10508724	0.86[EUR][1000 genomes]
rs1055192	0.93[ASN][1000 genomes]
rs10764718	1.00[EUR][1000 genomes]
rs10764719	1.00[EUR][1000 genomes]
rs10826346	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10829285	1.00[EUR][1000 genomes]
rs10829286	1.00[EUR][1000 genomes]
rs10829294	1.00[EUR][1000 genomes]
rs10829296	1.00[EUR][1000 genomes]
rs10829302	1.00[EUR][1000 genomes]
rs10829304	1.00[EUR][1000 genomes]
rs10829305	1.00[EUR][1000 genomes]
rs11006694	0.96[ASN][1000 genomes]
rs11006697	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11006698	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11006699	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11006700	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11006703	0.81[ASN][1000 genomes]
rs11006704	0.81[ASN][1000 genomes]
rs11006705	0.81[ASN][1000 genomes]
rs11006707	0.81[ASN][1000 genomes]
rs11006708	0.80[ASN][1000 genomes]
rs11015832	0.86[EUR][1000 genomes]
rs11015833	0.86[EUR][1000 genomes]
rs11015836	0.83[EUR][1000 genomes]
rs11015840	0.86[EUR][1000 genomes]
rs11015856	0.86[EUR][1000 genomes]
rs11015857	0.86[EUR][1000 genomes]
rs11015858	0.86[EUR][1000 genomes]
rs11015875	0.86[EUR][1000 genomes]
rs11015898	1.00[EUR][1000 genomes]
rs11015923	1.00[EUR][1000 genomes]
rs11015927	1.00[EUR][1000 genomes]
rs11015928	1.00[EUR][1000 genomes]
rs11015936	1.00[EUR][1000 genomes]
rs11015938	1.00[EUR][1000 genomes]
rs11015946	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015948	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015949	0.86[AMR][1000 genomes]
rs11015950	0.86[AMR][1000 genomes]
rs11015951	0.86[AMR][1000 genomes]
rs11015952	0.86[AMR][1000 genomes]
rs11015953	0.86[AMR][1000 genomes]
rs11015954	0.86[AMR][1000 genomes]
rs11015957	1.00[EUR][1000 genomes]
rs11015958	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015969	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015980	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015981	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12217955	1.00[EUR][1000 genomes]
rs12218027	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12219258	0.86[EUR][1000 genomes]
rs12219955	1.00[EUR][1000 genomes]
rs12220217	1.00[EUR][1000 genomes]
rs12220463	0.86[EUR][1000 genomes]
rs12257550	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411804	0.86[EUR][1000 genomes]
rs12569521	1.00[EUR][1000 genomes]
rs12571836	0.86[EUR][1000 genomes]
rs12572531	1.00[EUR][1000 genomes]
rs17756134	0.86[EUR][1000 genomes]
rs17756253	0.86[EUR][1000 genomes]
rs1907388	0.86[EUR][1000 genomes]
rs2242356	0.86[EUR][1000 genomes]
rs57704247	0.83[AMR][1000 genomes]
rs57812861	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72629761	0.86[EUR][1000 genomes]
rs72629762	0.86[EUR][1000 genomes]
rs72629763	0.86[EUR][1000 genomes]
rs72629764	0.86[EUR][1000 genomes]
rs72629766	1.00[EUR][1000 genomes]
rs72629767	1.00[EUR][1000 genomes]
rs72629772	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629774	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629775	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629777	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629778	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72631837	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72631838	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72631839	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72631840	0.81[ASN][1000 genomes]
rs7358151	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898679	0.86[AMR][1000 genomes]
rs7912702	0.86[AMR][1000 genomes]
rs8181307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27999600-28002600	Weak transcription	Osteobl	bone
2	chr10:27999600-28004000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:28001000-28001800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr10:28001400-28001800	Genic enhancers	Ovary	ovary
5	chr10:28001400-28002400	Enhancers	Aorta	Aorta
6	chr10:28001400-28003800	Weak transcription	Psoas Muscle	Psoas
7	chr10:28001600-28002600	Enhancers	Fetal Muscle Leg	muscle
8	chr10:28001600-28002800	Enhancers	Stomach Smooth Muscle	stomach

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