Variant report

Variant	rs57704247
Chromosome Location	chr10:27981793-27981794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11015949	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015950	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015951	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015952	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015953	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015954	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1907393	0.81[ASN][1000 genomes]
rs72629776	0.83[AMR][1000 genomes]
rs7898679	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7912702	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27977000-27981800	Weak transcription	Ovary	ovary
2	chr10:27981400-27982400	Enhancers	Stomach Smooth Muscle	stomach
3	chr10:27981600-27982200	Enhancers	Colon Smooth Muscle	Colon
4	chr10:27981600-27982200	Enhancers	Fetal Heart	heart
5	chr10:27981600-27982400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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