Variant report

Variant	rs1907393
Chromosome Location	chr10:27977152-27977153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10430558	0.80[JPT][hapmap]
rs10826346	0.87[JPT][hapmap]
rs11006694	0.86[JPT][hapmap]
rs11015948	0.86[JPT][hapmap]
rs11015949	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs11015950	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs11015951	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs11015952	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs11015953	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs11015958	0.86[AMR][1000 genomes]
rs11015980	0.90[JPT][hapmap]
rs11015981	0.86[JPT][hapmap]
rs12218027	0.86[JPT][hapmap]
rs57704247	0.81[ASN][1000 genomes]
rs7358151	0.86[JPT][hapmap]
rs7898679	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs7912702	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs8181307	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27971600-27981600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:27973000-27981400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:27976200-27977600	Enhancers	Fetal Stomach	stomach
4	chr10:27976200-27977800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:27976200-27977800	Enhancers	Fetal Heart	heart
6	chr10:27976400-27977800	Enhancers	Fetal Lung	lung
7	chr10:27976800-27977400	Enhancers	Adipose Nuclei	Adipose
8	chr10:27976800-27977800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:27976800-27977800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:27977000-27981800	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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