Variant report

Variant	rs11015948
Chromosome Location	chr10:27980582-27980583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1002861	1.00[EUR][1000 genomes]
rs1027342	1.00[EUR][1000 genomes]
rs10430558	0.92[CHB][hapmap];0.87[JPT][hapmap];1.00[AMR][1000 genomes]
rs10430568	0.92[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes]
rs10508722	1.00[EUR][1000 genomes]
rs10508724	0.86[EUR][1000 genomes]
rs10764699	0.86[EUR][1000 genomes]
rs10764718	1.00[EUR][1000 genomes]
rs10764719	1.00[EUR][1000 genomes]
rs10826346	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10829285	1.00[EUR][1000 genomes]
rs10829286	1.00[EUR][1000 genomes]
rs10829294	1.00[EUR][1000 genomes]
rs10829296	1.00[EUR][1000 genomes]
rs10829302	1.00[EUR][1000 genomes]
rs10829304	1.00[EUR][1000 genomes]
rs10829305	1.00[EUR][1000 genomes]
rs11006694	0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11006697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11006698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11006699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11006700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11006703	1.00[AMR][1000 genomes]
rs11006704	1.00[AMR][1000 genomes]
rs11006705	1.00[AMR][1000 genomes]
rs11006707	1.00[AMR][1000 genomes]
rs11006714	0.92[CHB][hapmap];0.97[CHD][hapmap]
rs11006728	0.82[CHB][hapmap]
rs11015826	0.86[EUR][1000 genomes]
rs11015832	0.86[EUR][1000 genomes]
rs11015833	0.86[EUR][1000 genomes]
rs11015836	0.83[EUR][1000 genomes]
rs11015840	0.86[EUR][1000 genomes]
rs11015856	0.86[EUR][1000 genomes]
rs11015857	0.86[EUR][1000 genomes]
rs11015858	0.86[EUR][1000 genomes]
rs11015875	0.86[EUR][1000 genomes]
rs11015898	1.00[EUR][1000 genomes]
rs11015923	1.00[EUR][1000 genomes]
rs11015927	1.00[EUR][1000 genomes]
rs11015928	1.00[EUR][1000 genomes]
rs11015936	1.00[EUR][1000 genomes]
rs11015938	1.00[EUR][1000 genomes]
rs11015946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015949	0.87[JPT][hapmap]
rs11015950	0.86[JPT][hapmap]
rs11015951	0.88[GIH][hapmap];0.87[JPT][hapmap]
rs11015952	0.88[GIH][hapmap];0.87[JPT][hapmap]
rs11015953	0.88[GIH][hapmap];0.87[JPT][hapmap]
rs11015954	0.85[JPT][hapmap]
rs11015957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015958	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11015973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015980	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11015981	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12217955	1.00[EUR][1000 genomes]
rs12218027	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12218420	0.86[EUR][1000 genomes]
rs12219258	0.86[EUR][1000 genomes]
rs12219955	1.00[EUR][1000 genomes]
rs12220217	1.00[EUR][1000 genomes]
rs12220463	0.86[EUR][1000 genomes]
rs12257550	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12264856	0.92[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12411804	0.86[EUR][1000 genomes]
rs12569521	1.00[EUR][1000 genomes]
rs12571836	0.86[EUR][1000 genomes]
rs12572531	1.00[EUR][1000 genomes]
rs17756134	0.86[EUR][1000 genomes]
rs17756253	0.86[EUR][1000 genomes]
rs1907388	0.86[EUR][1000 genomes]
rs1907393	0.86[JPT][hapmap]
rs2065689	0.84[CHB][hapmap]
rs2242356	0.86[EUR][1000 genomes]
rs3737184	0.84[CHB][hapmap]
rs57812861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7077784	0.84[CHB][hapmap]
rs72629759	0.86[EUR][1000 genomes]
rs72629760	0.86[EUR][1000 genomes]
rs72629761	0.86[EUR][1000 genomes]
rs72629762	0.86[EUR][1000 genomes]
rs72629763	0.86[EUR][1000 genomes]
rs72629764	0.86[EUR][1000 genomes]
rs72629766	1.00[EUR][1000 genomes]
rs72629767	1.00[EUR][1000 genomes]
rs72629772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72629773	0.92[ASN][1000 genomes]
rs72629774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72629775	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72629776	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72631837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72631838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72631839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7358151	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7898679	0.84[JPT][hapmap]
rs7912702	0.94[GIH][hapmap];0.87[JPT][hapmap]
rs8181307	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs952404	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27971600-27981600	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:27973000-27981400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:27977000-27981800	Weak transcription	Ovary	ovary
4	chr10:27977800-27981600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:27977800-27981600	Weak transcription	Fetal Heart	heart

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