Variant report

Variant	rs72629764
Chromosome Location	chr10:27861640-27861641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27859104..27861978-chr10:27867954..27869604,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1002861	0.86[EUR][1000 genomes]
rs1027342	0.86[EUR][1000 genomes]
rs10508722	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10508724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10764699	1.00[EUR][1000 genomes]
rs10764718	0.86[EUR][1000 genomes]
rs10764719	0.86[EUR][1000 genomes]
rs10829285	0.86[EUR][1000 genomes]
rs10829286	0.86[EUR][1000 genomes]
rs10829294	0.86[EUR][1000 genomes]
rs10829296	0.86[EUR][1000 genomes]
rs10829302	0.86[EUR][1000 genomes]
rs10829304	0.86[EUR][1000 genomes]
rs10829305	0.86[EUR][1000 genomes]
rs11006697	0.86[EUR][1000 genomes]
rs11006698	0.86[EUR][1000 genomes]
rs11006699	0.86[EUR][1000 genomes]
rs11006700	0.86[EUR][1000 genomes]
rs11015826	1.00[EUR][1000 genomes]
rs11015832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015857	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015862	0.87[EUR][1000 genomes]
rs11015875	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11015898	0.86[EUR][1000 genomes]
rs11015923	0.86[EUR][1000 genomes]
rs11015927	0.86[EUR][1000 genomes]
rs11015928	0.86[EUR][1000 genomes]
rs11015936	0.86[EUR][1000 genomes]
rs11015938	0.86[EUR][1000 genomes]
rs11015946	0.86[EUR][1000 genomes]
rs11015948	0.86[EUR][1000 genomes]
rs11015957	0.86[EUR][1000 genomes]
rs11015969	0.86[EUR][1000 genomes]
rs11015973	0.86[EUR][1000 genomes]
rs11015980	0.86[EUR][1000 genomes]
rs11015981	0.86[EUR][1000 genomes]
rs12217955	0.86[EUR][1000 genomes]
rs12218027	0.86[EUR][1000 genomes]
rs12218420	1.00[EUR][1000 genomes]
rs12219258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12219955	0.86[EUR][1000 genomes]
rs12220217	0.86[EUR][1000 genomes]
rs12220463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264856	0.86[EUR][1000 genomes]
rs12411804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12569521	0.86[EUR][1000 genomes]
rs12571836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12572531	0.86[EUR][1000 genomes]
rs17756134	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17756253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1886402	0.86[EUR][1000 genomes]
rs2242356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3765133	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57812861	0.86[EUR][1000 genomes]
rs72629759	1.00[EUR][1000 genomes]
rs72629760	1.00[EUR][1000 genomes]
rs72629761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72629762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72629763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72629766	0.86[EUR][1000 genomes]
rs72629767	0.86[EUR][1000 genomes]
rs72629772	0.86[EUR][1000 genomes]
rs72629774	0.86[EUR][1000 genomes]
rs72629775	0.86[EUR][1000 genomes]
rs72629776	0.86[EUR][1000 genomes]
rs72629777	0.86[EUR][1000 genomes]
rs72629778	0.86[EUR][1000 genomes]
rs72631837	0.86[EUR][1000 genomes]
rs72631838	0.86[EUR][1000 genomes]
rs72631839	0.86[EUR][1000 genomes]
rs8181307	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27853000-27867400	Weak transcription	Aorta	Aorta
2	chr10:27855600-27866800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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