Variant report

Variant	rs1886402
Chromosome Location	chr10:27780478-27780479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10082387	0.96[ASN][1000 genomes]
rs10128112	0.90[ASN][1000 genomes]
rs10508724	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10764695	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10764696	0.90[ASN][1000 genomes]
rs10764697	0.90[ASN][1000 genomes]
rs10764699	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10829259	0.86[EUR][1000 genomes]
rs10829261	0.90[ASN][1000 genomes]
rs11015787	0.86[EUR][1000 genomes]
rs11015788	0.86[EUR][1000 genomes]
rs11015795	0.86[EUR][1000 genomes]
rs11015797	0.86[EUR][1000 genomes]
rs11015800	0.86[EUR][1000 genomes]
rs11015803	0.86[EUR][1000 genomes]
rs11015805	0.86[EUR][1000 genomes]
rs11015807	0.95[ASN][1000 genomes]
rs11015810	0.94[ASN][1000 genomes]
rs11015812	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015815	0.98[ASN][1000 genomes]
rs11015816	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015817	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015823	0.90[ASN][1000 genomes]
rs11015826	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015832	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015833	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015836	0.83[EUR][1000 genomes]
rs11015840	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015856	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11015857	0.86[EUR][1000 genomes]
rs11015858	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11015875	0.86[EUR][1000 genomes]
rs12218420	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12219258	0.86[EUR][1000 genomes]
rs12220463	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12263006	0.90[ASN][1000 genomes]
rs12411804	0.86[EUR][1000 genomes]
rs12569737	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12571836	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12571985	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12573111	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17756134	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17756253	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17829007	0.86[EUR][1000 genomes]
rs2242356	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28665347	0.86[EUR][1000 genomes]
rs3765133	0.81[ASN][1000 genomes]
rs4237384	0.90[ASN][1000 genomes]
rs4345873	0.90[ASN][1000 genomes]
rs4514312	0.90[ASN][1000 genomes]
rs4634991	0.89[ASN][1000 genomes]
rs61226328	0.98[ASN][1000 genomes]
rs72629756	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72629757	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72629758	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72629759	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629760	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629761	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72629762	0.86[EUR][1000 genomes]
rs72629763	0.86[EUR][1000 genomes]
rs72629764	0.86[EUR][1000 genomes]
rs7475332	0.85[ASN][1000 genomes]
rs765699	0.86[EUR][1000 genomes]
rs9971075	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27775600-27780600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:27778800-27781000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:27779000-27781200	Enhancers	NHEK	skin
4	chr10:27779800-27781000	ZNF genes & repeats	Liver	Liver
5	chr10:27779800-27781200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr10:27780400-27789000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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