Variant report

Variant	rs10829259
Chromosome Location	chr10:27736486-27736487
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27725869..27728262-chr10:27734459..27736810,2	K562	blood:
2	chr10:27736155..27739098-chr10:27747660..27750023,2	K562	blood:
3	chr10:27736155..27739098-chr10:27747660..27750023,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508724	1.00[TSI][hapmap]
rs10764695	1.00[EUR][1000 genomes]
rs11015787	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015788	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015789	0.86[EUR][1000 genomes]
rs11015790	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015795	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015797	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015800	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015802	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015803	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015804	0.86[EUR][1000 genomes]
rs11015805	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015812	1.00[EUR][1000 genomes]
rs11015816	1.00[EUR][1000 genomes]
rs11015817	1.00[EUR][1000 genomes]
rs11015858	1.00[TSI][hapmap]
rs11813042	1.00[AFR][1000 genomes]
rs12220463	1.00[TSI][hapmap]
rs12569737	1.00[EUR][1000 genomes]
rs12571836	1.00[TSI][hapmap]
rs12571985	1.00[EUR][1000 genomes]
rs12573111	1.00[EUR][1000 genomes]
rs17756134	1.00[TSI][hapmap]
rs17829007	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1886402	0.86[EUR][1000 genomes]
rs2242356	1.00[TSI][hapmap]
rs28665347	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3765133	0.87[EUR][1000 genomes]
rs588756	0.86[ASN][1000 genomes]
rs609313	0.86[ASN][1000 genomes]
rs636932	0.88[ASN][1000 genomes]
rs680814	0.88[ASN][1000 genomes]
rs72629756	1.00[EUR][1000 genomes]
rs765699	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv2750890	chr10:27669479-27774501	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27735200-27736600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:27735200-27736800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:27735200-27737000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:27735200-27737200	Enhancers	Primary T cells from cord blood	blood
5	chr10:27735200-27737200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:27735200-27739000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:27735400-27736800	Enhancers	Fetal Thymus	thymus
8	chr10:27735400-27737400	Enhancers	Primary hematopoietic stem cells	blood
9	chr10:27735600-27738000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:27735600-27738400	Weak transcription	HMEC	breast
11	chr10:27735800-27738200	Weak transcription	NHEK	skin
12	chr10:27736000-27736800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:27736000-27739000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:27736200-27736600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr10:27736200-27736800	Weak transcription	Primary B cells from cord blood	blood
16	chr10:27736200-27738000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:27736400-27738800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr10:27736400-27739000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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