Variant report

Variant	rs12571985
Chromosome Location	chr10:27760815-27760816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27744949..27747653-chr10:27760033..27762737,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10082387	0.88[ASN][1000 genomes]
rs10128112	0.82[ASN][1000 genomes]
rs10508724	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs10764695	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10764696	0.82[ASN][1000 genomes]
rs10764697	0.82[ASN][1000 genomes]
rs10764699	1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs10829259	1.00[EUR][1000 genomes]
rs10829261	0.82[ASN][1000 genomes]
rs11015787	1.00[EUR][1000 genomes]
rs11015788	1.00[EUR][1000 genomes]
rs11015789	0.86[EUR][1000 genomes]
rs11015790	0.87[EUR][1000 genomes]
rs11015795	1.00[EUR][1000 genomes]
rs11015797	1.00[EUR][1000 genomes]
rs11015800	1.00[EUR][1000 genomes]
rs11015802	0.86[EUR][1000 genomes]
rs11015803	1.00[EUR][1000 genomes]
rs11015804	0.86[EUR][1000 genomes]
rs11015805	1.00[EUR][1000 genomes]
rs11015807	0.95[ASN][1000 genomes]
rs11015810	0.95[ASN][1000 genomes]
rs11015812	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11015815	0.90[ASN][1000 genomes]
rs11015816	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015817	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015823	0.82[ASN][1000 genomes]
rs11015826	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs11015832	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs11015840	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs11015856	0.86[CHB][hapmap]
rs11015857	0.87[CHB][hapmap]
rs11015858	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs12218420	0.91[ASN][1000 genomes]
rs12220463	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs12263006	0.82[ASN][1000 genomes]
rs12569737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12571836	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs12573111	1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17756134	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs17829007	1.00[EUR][1000 genomes]
rs1886402	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2242356	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs28665347	1.00[EUR][1000 genomes]
rs3765133	0.87[EUR][1000 genomes]
rs4237384	0.82[ASN][1000 genomes]
rs4345873	0.82[ASN][1000 genomes]
rs4514312	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs4634991	0.81[ASN][1000 genomes]
rs61226328	0.90[ASN][1000 genomes]
rs72629756	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72629757	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72629758	0.91[ASN][1000 genomes]
rs72629759	0.85[ASN][1000 genomes]
rs72629760	0.85[ASN][1000 genomes]
rs765699	1.00[EUR][1000 genomes]
rs9971075	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv2750890	chr10:27669479-27774501	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27759800-27761200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:27760000-27761000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:27760200-27761800	Enhancers	Stomach Smooth Muscle	stomach
4	chr10:27760200-27764400	Weak transcription	Colon Smooth Muscle	Colon

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