Variant report

Variant	rs4514312
Chromosome Location	chr10:27784408-27784409
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27784391..27787281-chr10:27791637..27793461,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000099246	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10082387	0.90[ASN][1000 genomes]
rs10128112	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508724	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs10764695	0.90[ASN][1000 genomes]
rs10764696	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764697	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764699	0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10829261	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015807	0.87[ASN][1000 genomes]
rs11015810	0.87[ASN][1000 genomes]
rs11015812	0.88[ASN][1000 genomes]
rs11015815	0.92[ASN][1000 genomes]
rs11015816	0.91[ASN][1000 genomes]
rs11015817	0.91[ASN][1000 genomes]
rs11015823	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015826	0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs11015832	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs11015840	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs11015858	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs11813831	0.90[EUR][1000 genomes]
rs11814433	0.91[EUR][1000 genomes]
rs12218420	0.91[ASN][1000 genomes]
rs12220463	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs12263006	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415979	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs12569737	0.84[ASN][1000 genomes]
rs12571836	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs12571985	0.82[ASN][1000 genomes]
rs12573111	0.89[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs12772577	0.91[EUR][1000 genomes]
rs12777582	0.89[EUR][1000 genomes]
rs12778569	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17749397	0.89[EUR][1000 genomes]
rs17756134	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1886402	0.90[ASN][1000 genomes]
rs2242356	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs2368231	0.90[EUR][1000 genomes]
rs2642274	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs2992007	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs34978206	0.91[EUR][1000 genomes]
rs35224308	0.90[EUR][1000 genomes]
rs35590474	0.90[EUR][1000 genomes]
rs35599449	0.91[EUR][1000 genomes]
rs4237384	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4345873	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4634991	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749249	0.91[EUR][1000 genomes]
rs594549	0.89[EUR][1000 genomes]
rs61226328	0.92[ASN][1000 genomes]
rs61844844	0.89[EUR][1000 genomes]
rs61844847	0.91[EUR][1000 genomes]
rs625433	0.88[EUR][1000 genomes]
rs661882	0.89[EUR][1000 genomes]
rs7090220	0.91[EUR][1000 genomes]
rs717287	0.90[EUR][1000 genomes]
rs72629756	0.87[ASN][1000 genomes]
rs72629757	0.87[ASN][1000 genomes]
rs72629758	0.91[ASN][1000 genomes]
rs72629759	0.85[ASN][1000 genomes]
rs72629760	0.85[ASN][1000 genomes]
rs7475332	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9732977	0.90[EUR][1000 genomes]
rs9804355	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9971075	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27780400-27789000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:27780800-27789200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:27784400-27785400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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