Variant report

Variant	rs12218420
Chromosome Location	chr10:27781712-27781713
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1002861	0.86[EUR][1000 genomes]
rs10082387	0.97[ASN][1000 genomes]
rs10128112	0.91[ASN][1000 genomes]
rs1027342	0.86[EUR][1000 genomes]
rs10508722	0.86[EUR][1000 genomes]
rs10508724	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10764695	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10764696	0.91[ASN][1000 genomes]
rs10764697	0.91[ASN][1000 genomes]
rs10764699	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10764718	0.86[EUR][1000 genomes]
rs10764719	0.86[EUR][1000 genomes]
rs10829261	0.91[ASN][1000 genomes]
rs10829285	0.86[EUR][1000 genomes]
rs10829286	0.86[EUR][1000 genomes]
rs10829294	0.86[EUR][1000 genomes]
rs10829296	0.86[EUR][1000 genomes]
rs10829302	0.86[EUR][1000 genomes]
rs10829304	0.86[EUR][1000 genomes]
rs10829305	0.86[EUR][1000 genomes]
rs11015807	0.95[ASN][1000 genomes]
rs11015810	0.95[ASN][1000 genomes]
rs11015812	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11015815	0.99[ASN][1000 genomes]
rs11015816	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11015817	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11015823	0.91[ASN][1000 genomes]
rs11015826	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11015832	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11015833	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11015840	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11015856	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11015857	0.89[CHB][hapmap];1.00[EUR][1000 genomes]
rs11015858	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11015862	0.87[EUR][1000 genomes]
rs11015875	1.00[EUR][1000 genomes]
rs11015898	0.86[EUR][1000 genomes]
rs11015923	0.86[EUR][1000 genomes]
rs11015927	0.86[EUR][1000 genomes]
rs11015928	0.86[EUR][1000 genomes]
rs11015936	0.86[EUR][1000 genomes]
rs11015938	0.86[EUR][1000 genomes]
rs11015946	0.86[EUR][1000 genomes]
rs11015948	0.86[EUR][1000 genomes]
rs12217955	0.86[EUR][1000 genomes]
rs12219258	1.00[EUR][1000 genomes]
rs12219955	0.86[EUR][1000 genomes]
rs12220217	0.86[EUR][1000 genomes]
rs12220463	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12263006	0.91[ASN][1000 genomes]
rs12411804	1.00[EUR][1000 genomes]
rs12569521	0.86[EUR][1000 genomes]
rs12569737	0.92[ASN][1000 genomes]
rs12571836	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12571985	0.91[ASN][1000 genomes]
rs12572531	0.86[EUR][1000 genomes]
rs12573111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17756134	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17756253	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1886402	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2242356	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3765133	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4237384	0.91[ASN][1000 genomes]
rs4345873	0.91[ASN][1000 genomes]
rs4514312	0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs4634991	0.90[ASN][1000 genomes]
rs61226328	0.99[ASN][1000 genomes]
rs72629756	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72629757	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72629758	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72629759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72629760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72629761	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72629762	1.00[EUR][1000 genomes]
rs72629763	1.00[EUR][1000 genomes]
rs72629764	1.00[EUR][1000 genomes]
rs72629766	0.86[EUR][1000 genomes]
rs72629767	0.86[EUR][1000 genomes]
rs7475332	0.86[ASN][1000 genomes]
rs9971075	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27780400-27789000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:27780800-27789200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:27781200-27783400	Weak transcription	Monocytes-CD14+_RO01746	blood

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