Variant report

Variant	rs2242356
Chromosome Location	chr10:27822816-27822817
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27813292..27818525-chr10:27818980..27823484,5	K562	blood:
2	chr10:27792468..27794162-chr10:27821569..27823623,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000099246	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1002861	0.86[EUR][1000 genomes]
rs1027342	0.86[EUR][1000 genomes]
rs10508722	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10508724	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10764695	0.81[ASN][1000 genomes]
rs10764699	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10764718	0.86[EUR][1000 genomes]
rs10764719	0.86[EUR][1000 genomes]
rs10829285	0.86[EUR][1000 genomes]
rs10829286	0.86[EUR][1000 genomes]
rs10829294	0.86[EUR][1000 genomes]
rs10829296	0.86[EUR][1000 genomes]
rs10829302	0.86[EUR][1000 genomes]
rs10829304	0.86[EUR][1000 genomes]
rs10829305	0.86[EUR][1000 genomes]
rs11015815	0.82[ASN][1000 genomes]
rs11015816	0.83[ASN][1000 genomes]
rs11015817	0.83[ASN][1000 genomes]
rs11015826	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11015832	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11015833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11015840	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11015856	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015857	0.94[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015858	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015862	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015875	1.00[EUR][1000 genomes]
rs11015898	0.86[EUR][1000 genomes]
rs11015923	0.86[EUR][1000 genomes]
rs11015927	0.86[EUR][1000 genomes]
rs11015928	0.86[EUR][1000 genomes]
rs11015936	0.86[EUR][1000 genomes]
rs11015938	0.86[EUR][1000 genomes]
rs11015946	0.86[EUR][1000 genomes]
rs11015948	0.86[EUR][1000 genomes]
rs11015957	0.86[EUR][1000 genomes]
rs11015969	0.86[EUR][1000 genomes]
rs11015973	0.86[EUR][1000 genomes]
rs11015980	0.86[EUR][1000 genomes]
rs11015981	0.86[EUR][1000 genomes]
rs12217955	0.86[EUR][1000 genomes]
rs12218420	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12219258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12219955	0.86[EUR][1000 genomes]
rs12220217	0.86[EUR][1000 genomes]
rs12220463	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12264856	0.86[EUR][1000 genomes]
rs12411804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12569521	0.86[EUR][1000 genomes]
rs12571836	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12572531	0.86[EUR][1000 genomes]
rs12573111	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs17756134	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17756253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1886402	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3765133	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4514312	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs57812861	0.86[EUR][1000 genomes]
rs61226328	0.82[ASN][1000 genomes]
rs72629758	0.83[ASN][1000 genomes]
rs72629759	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72629760	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72629761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72629762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72629763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72629764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72629766	0.86[EUR][1000 genomes]
rs72629767	0.86[EUR][1000 genomes]
rs72629772	0.86[EUR][1000 genomes]
rs72629774	0.86[EUR][1000 genomes]
rs72629775	0.86[EUR][1000 genomes]
rs72629776	0.86[EUR][1000 genomes]
rs72629777	0.86[EUR][1000 genomes]
rs72629778	0.86[EUR][1000 genomes]
rs72631837	0.86[EUR][1000 genomes]
rs8181307	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27794400-27824000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:27794400-27837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:27794800-27823200	Weak transcription	Esophagus	oesophagus
4	chr10:27794800-27823200	Weak transcription	Spleen	Spleen
5	chr10:27795800-27832600	Weak transcription	Small Intestine	intestine
6	chr10:27800800-27823200	Weak transcription	Brain Anterior Caudate	brain
7	chr10:27801800-27829000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:27803400-27823200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:27803400-27823800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:27803400-27830800	Weak transcription	Hela-S3	cervix
11	chr10:27804000-27823000	Weak transcription	Lung	lung
12	chr10:27804000-27823000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:27804000-27823200	Weak transcription	Gastric	stomach
14	chr10:27804000-27823400	Weak transcription	Aorta	Aorta
15	chr10:27804600-27823000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:27804600-27823000	Weak transcription	Fetal Intestine Large	intestine
17	chr10:27806000-27823200	Weak transcription	NHEK	skin
18	chr10:27811000-27823200	Weak transcription	Thymus	Thymus
19	chr10:27813400-27823200	Weak transcription	Fetal Intestine Small	intestine
20	chr10:27814000-27823200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:27814200-27836000	Weak transcription	Brain Germinal Matrix	brain
22	chr10:27815000-27831000	Weak transcription	Fetal Heart	heart
23	chr10:27815000-27834400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:27815400-27823200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:27815400-27823200	Weak transcription	Pancreas	Pancrea
26	chr10:27815400-27823400	Weak transcription	Ovary	ovary
27	chr10:27815600-27823200	Weak transcription	Left Ventricle	heart
28	chr10:27815600-27823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:27815600-27823200	Weak transcription	NHLF	lung
30	chr10:27815600-27824000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr10:27815600-27831600	Weak transcription	Psoas Muscle	Psoas
32	chr10:27815800-27823200	Weak transcription	Fetal Stomach	stomach
33	chr10:27816400-27823200	Weak transcription	Right Ventricle	heart
34	chr10:27816800-27826600	Weak transcription	Brain Substantia Nigra	brain
35	chr10:27817600-27823400	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:27817600-27826000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:27817800-27823200	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:27818400-27828000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:27818600-27823000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr10:27818600-27823200	Weak transcription	Brain Angular Gyrus	brain
41	chr10:27818600-27823800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr10:27818600-27823800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr10:27818800-27825200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr10:27818800-27830800	Weak transcription	Stomach Mucosa	stomach
45	chr10:27819200-27823000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:27819800-27823200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:27820400-27829400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:27820400-27835200	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr10:27820600-27823200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:27820600-27823400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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