Variant report

Variant	rs11015826
Chromosome Location	chr10:27794104-27794105
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1002861	0.86[EUR][1000 genomes]
rs10082387	0.91[ASN][1000 genomes]
rs10128112	0.85[ASN][1000 genomes]
rs1027342	0.86[EUR][1000 genomes]
rs10508722	0.86[EUR][1000 genomes]
rs10508724	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764695	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10764696	0.85[ASN][1000 genomes]
rs10764697	0.85[ASN][1000 genomes]
rs10764699	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10764718	0.86[EUR][1000 genomes]
rs10764719	0.86[EUR][1000 genomes]
rs10829261	0.85[ASN][1000 genomes]
rs10829285	0.86[EUR][1000 genomes]
rs10829286	0.86[EUR][1000 genomes]
rs10829294	0.86[EUR][1000 genomes]
rs10829296	0.86[EUR][1000 genomes]
rs10829302	0.86[EUR][1000 genomes]
rs10829304	0.86[EUR][1000 genomes]
rs10829305	0.86[EUR][1000 genomes]
rs11015807	0.89[ASN][1000 genomes]
rs11015810	0.89[ASN][1000 genomes]
rs11015812	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11015815	0.93[ASN][1000 genomes]
rs11015816	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11015817	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11015823	0.85[ASN][1000 genomes]
rs11015832	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11015833	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11015840	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11015856	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015857	0.89[CHB][hapmap];1.00[EUR][1000 genomes]
rs11015858	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015862	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11015875	1.00[EUR][1000 genomes]
rs11015898	0.86[EUR][1000 genomes]
rs11015923	0.86[EUR][1000 genomes]
rs11015927	0.86[EUR][1000 genomes]
rs11015928	0.86[EUR][1000 genomes]
rs11015936	0.86[EUR][1000 genomes]
rs11015938	0.86[EUR][1000 genomes]
rs11015946	0.86[EUR][1000 genomes]
rs11015948	0.86[EUR][1000 genomes]
rs11015957	0.86[EUR][1000 genomes]
rs12217955	0.86[EUR][1000 genomes]
rs12218420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12219258	1.00[EUR][1000 genomes]
rs12219955	0.86[EUR][1000 genomes]
rs12220217	0.86[EUR][1000 genomes]
rs12220463	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12263006	0.85[ASN][1000 genomes]
rs12411804	1.00[EUR][1000 genomes]
rs12569521	0.86[EUR][1000 genomes]
rs12569737	0.86[ASN][1000 genomes]
rs12571836	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12571985	0.85[ASN][1000 genomes]
rs12572531	0.86[EUR][1000 genomes]
rs12573111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17756134	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17756253	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1886402	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2242356	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3765133	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4237384	0.85[ASN][1000 genomes]
rs4345873	0.85[ASN][1000 genomes]
rs4514312	0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs4634991	0.84[ASN][1000 genomes]
rs57812861	0.86[EUR][1000 genomes]
rs61226328	0.93[ASN][1000 genomes]
rs72629756	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72629757	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72629758	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72629759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629761	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72629762	1.00[EUR][1000 genomes]
rs72629763	1.00[EUR][1000 genomes]
rs72629764	1.00[EUR][1000 genomes]
rs72629766	0.86[EUR][1000 genomes]
rs72629767	0.86[EUR][1000 genomes]
rs72629772	0.86[EUR][1000 genomes]
rs72629774	0.86[EUR][1000 genomes]
rs7475332	0.80[ASN][1000 genomes]
rs9971075	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv825319	chr10:27792807-27795876	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27792400-27794200	Active TSS	Fetal Brain Male	brain
2	chr10:27792400-27794400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:27792400-27794600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:27792400-27794800	Active TSS	Fetal Kidney	kidney
5	chr10:27792400-27795000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr10:27792600-27794400	Active TSS	H9 Cell Line	embryonic stem cell
7	chr10:27792600-27794400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:27792600-27794400	Active TSS	Fetal Muscle Trunk	muscle
9	chr10:27792600-27794600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:27792600-27794800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:27792600-27794800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:27792600-27794800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:27792600-27794800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:27792600-27795000	Active TSS	Right Atrium	heart
15	chr10:27792600-27795200	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr10:27792800-27794200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:27792800-27794200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:27792800-27794200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:27792800-27794200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:27792800-27794200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:27792800-27794200	Active TSS	Fetal Heart	heart
22	chr10:27792800-27794200	Active TSS	Gastric	stomach
23	chr10:27792800-27794200	Active TSS	Lung	lung
24	chr10:27792800-27794200	Active TSS	Pancreas	Pancrea
25	chr10:27792800-27794400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr10:27792800-27794400	Active TSS	Aorta	Aorta
27	chr10:27792800-27794400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
28	chr10:27792800-27794400	Active TSS	Fetal Intestine Large	intestine
29	chr10:27792800-27794400	Active TSS	Fetal Intestine Small	intestine
30	chr10:27792800-27794400	Active TSS	Ovary	ovary
31	chr10:27792800-27794400	Active TSS	Placenta Amnion	Placenta Amnion
32	chr10:27792800-27794600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:27792800-27794600	Active TSS	Colon Smooth Muscle	Colon
34	chr10:27792800-27794600	Active TSS	Fetal Lung	lung
35	chr10:27792800-27794600	Active TSS	Left Ventricle	heart
36	chr10:27792800-27794600	Active TSS	Right Ventricle	heart
37	chr10:27792800-27794600	Active TSS	Stomach Smooth Muscle	stomach
38	chr10:27792800-27794600	Active TSS	HSMM	muscle
39	chr10:27792800-27794600	Active TSS	NHDF-Ad	bronchial
40	chr10:27792800-27794600	Active TSS	NHLF	lung
41	chr10:27792800-27794800	Active TSS	Esophagus	oesophagus
42	chr10:27792800-27794800	Active TSS	A549	lung
43	chr10:27792800-27794800	Active TSS	HSMMtube	muscle
44	chr10:27792800-27795000	Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr10:27792800-27795000	Active TSS	Psoas Muscle	Psoas
46	chr10:27792800-27795200	Active TSS	Thymus	Thymus
47	chr10:27793000-27794200	Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr10:27793000-27794200	Active TSS	Primary T helper cells PMA-I stimulated	--
49	chr10:27793000-27794200	Active TSS	Placenta	Placenta
50	chr10:27793000-27794200	Active TSS	Rectal Mucosa Donor 31	rectum

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