Variant report

Variant	rs10508724
Chromosome Location	chr10:27828522-27828523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27814407..27819485-chr10:27827965..27831348,4	K562	blood:
2	chr10:27817702..27821230-chr10:27827784..27829695,3	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1002861	0.86[EUR][1000 genomes]
rs1027342	0.86[EUR][1000 genomes]
rs10508722	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10764699	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10764718	0.86[EUR][1000 genomes]
rs10764719	0.86[EUR][1000 genomes]
rs10829285	0.86[EUR][1000 genomes]
rs10829286	0.86[EUR][1000 genomes]
rs10829294	0.86[EUR][1000 genomes]
rs10829296	0.86[EUR][1000 genomes]
rs10829302	0.86[EUR][1000 genomes]
rs10829304	0.86[EUR][1000 genomes]
rs10829305	0.86[EUR][1000 genomes]
rs11006697	0.86[EUR][1000 genomes]
rs11015815	0.81[ASN][1000 genomes]
rs11015816	0.81[ASN][1000 genomes]
rs11015817	0.81[ASN][1000 genomes]
rs11015826	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015832	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015840	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015856	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015857	0.94[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015858	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015862	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015875	1.00[EUR][1000 genomes]
rs11015898	0.86[EUR][1000 genomes]
rs11015923	0.86[EUR][1000 genomes]
rs11015927	0.86[EUR][1000 genomes]
rs11015928	0.86[EUR][1000 genomes]
rs11015936	0.86[EUR][1000 genomes]
rs11015938	0.86[EUR][1000 genomes]
rs11015946	0.86[EUR][1000 genomes]
rs11015948	0.86[EUR][1000 genomes]
rs11015957	0.86[EUR][1000 genomes]
rs11015969	0.86[EUR][1000 genomes]
rs11015973	0.86[EUR][1000 genomes]
rs11015980	0.86[EUR][1000 genomes]
rs11015981	0.86[EUR][1000 genomes]
rs12217955	0.86[EUR][1000 genomes]
rs12218027	0.86[EUR][1000 genomes]
rs12218420	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12219258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12219955	0.86[EUR][1000 genomes]
rs12220217	0.86[EUR][1000 genomes]
rs12220463	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12264856	0.86[EUR][1000 genomes]
rs12411804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12569521	0.86[EUR][1000 genomes]
rs12571836	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572531	0.86[EUR][1000 genomes]
rs12573111	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs17756134	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17756253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886402	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2242356	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3765133	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4514312	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs57812861	0.86[EUR][1000 genomes]
rs61226328	0.81[ASN][1000 genomes]
rs72629758	0.81[ASN][1000 genomes]
rs72629759	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72629760	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72629761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72629763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72629764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72629766	0.86[EUR][1000 genomes]
rs72629767	0.86[EUR][1000 genomes]
rs72629772	0.86[EUR][1000 genomes]
rs72629774	0.86[EUR][1000 genomes]
rs72629775	0.86[EUR][1000 genomes]
rs72629776	0.86[EUR][1000 genomes]
rs72629777	0.86[EUR][1000 genomes]
rs72629778	0.86[EUR][1000 genomes]
rs72631837	0.86[EUR][1000 genomes]
rs72631838	0.86[EUR][1000 genomes]
rs8181307	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27794400-27837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:27795800-27832600	Weak transcription	Small Intestine	intestine
3	chr10:27801800-27829000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:27803400-27830800	Weak transcription	Hela-S3	cervix
5	chr10:27814200-27836000	Weak transcription	Brain Germinal Matrix	brain
6	chr10:27815000-27831000	Weak transcription	Fetal Heart	heart
7	chr10:27815000-27834400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:27815600-27831600	Weak transcription	Psoas Muscle	Psoas
9	chr10:27818800-27830800	Weak transcription	Stomach Mucosa	stomach
10	chr10:27820400-27829400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:27820400-27835200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:27820600-27829400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr10:27821400-27828600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:27821400-27829600	Strong transcription	HSMM	muscle
15	chr10:27821800-27829600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:27821800-27830000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:27822200-27830000	Strong transcription	Primary B cells from cord blood	blood
18	chr10:27822200-27835200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:27822400-27829400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:27822400-27831600	Strong transcription	Osteobl	bone
21	chr10:27822400-27832000	Strong transcription	Primary B cells from peripheral blood	blood
22	chr10:27822600-27828600	Strong transcription	Duodenum Mucosa	Duodenum
23	chr10:27822600-27829200	Strong transcription	Placenta	Placenta
24	chr10:27822600-27829400	Strong transcription	Liver	Liver
25	chr10:27822600-27830200	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr10:27822600-27832400	Strong transcription	Adipose Nuclei	Adipose
27	chr10:27822600-27832400	Strong transcription	Dnd41	blood
28	chr10:27822600-27832800	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr10:27822800-27828800	Strong transcription	Primary hematopoietic stem cells	blood
30	chr10:27823000-27836200	Weak transcription	Fetal Brain Female	brain
31	chr10:27823000-27838200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:27823400-27836600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:27823600-27831600	Weak transcription	HUVEC	blood vessel
34	chr10:27823600-27834800	Weak transcription	Colon Smooth Muscle	Colon
35	chr10:27823600-27838200	Weak transcription	Pancreas	Pancrea
36	chr10:27823800-27830800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr10:27824000-27830000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr10:27824000-27833800	Weak transcription	Brain Anterior Caudate	brain
39	chr10:27824400-27829600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:27824400-27834000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr10:27824400-27835800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:27824400-27836200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr10:27824600-27829800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:27824600-27831000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr10:27824600-27833400	Weak transcription	Brain Angular Gyrus	brain
46	chr10:27824600-27834400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:27824600-27835200	Weak transcription	Colonic Mucosa	Colon
48	chr10:27824600-27836000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr10:27824600-27836400	Weak transcription	Fetal Kidney	kidney
50	chr10:27824600-27838000	Weak transcription	H1 Cell Line	embryonic stem cell

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