Variant report

Variant	rs12264856
Chromosome Location	chr10:28013317-28013318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28009110..28010721-chr10:28013300..28015169,2	MCF-7	breast:
2	chr10:27945241..27946199-chr10:28013100..28013831,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1002861	1.00[EUR][1000 genomes]
rs1027342	1.00[EUR][1000 genomes]
rs10430558	1.00[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs10430568	1.00[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs10508722	1.00[EUR][1000 genomes]
rs10508724	0.86[EUR][1000 genomes]
rs1055192	0.93[ASN][1000 genomes]
rs10764718	1.00[EUR][1000 genomes]
rs10764719	1.00[EUR][1000 genomes]
rs10826346	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10829285	1.00[EUR][1000 genomes]
rs10829286	1.00[EUR][1000 genomes]
rs10829294	1.00[EUR][1000 genomes]
rs10829296	1.00[EUR][1000 genomes]
rs10829302	1.00[EUR][1000 genomes]
rs10829304	1.00[EUR][1000 genomes]
rs10829305	1.00[EUR][1000 genomes]
rs11006694	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs11006697	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11006698	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11006699	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11006700	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11006703	0.81[ASN][1000 genomes]
rs11006704	0.81[ASN][1000 genomes]
rs11006705	0.81[ASN][1000 genomes]
rs11006707	0.81[ASN][1000 genomes]
rs11006708	0.80[ASN][1000 genomes]
rs11006714	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs11006728	0.91[CHB][hapmap]
rs11015856	0.86[EUR][1000 genomes]
rs11015857	0.86[EUR][1000 genomes]
rs11015858	0.86[EUR][1000 genomes]
rs11015875	0.86[EUR][1000 genomes]
rs11015898	1.00[EUR][1000 genomes]
rs11015923	1.00[EUR][1000 genomes]
rs11015927	1.00[EUR][1000 genomes]
rs11015928	1.00[EUR][1000 genomes]
rs11015936	1.00[EUR][1000 genomes]
rs11015938	1.00[EUR][1000 genomes]
rs11015946	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015948	0.92[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015949	0.80[JPT][hapmap]
rs11015951	0.80[JPT][hapmap]
rs11015952	0.80[JPT][hapmap]
rs11015953	0.80[JPT][hapmap]
rs11015957	1.00[EUR][1000 genomes]
rs11015958	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015969	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015980	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015981	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12217955	1.00[EUR][1000 genomes]
rs12218027	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12219258	0.86[EUR][1000 genomes]
rs12219955	1.00[EUR][1000 genomes]
rs12220217	1.00[EUR][1000 genomes]
rs12220463	0.86[EUR][1000 genomes]
rs12257550	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411804	0.86[EUR][1000 genomes]
rs12569521	1.00[EUR][1000 genomes]
rs12571836	0.86[EUR][1000 genomes]
rs12572531	1.00[EUR][1000 genomes]
rs17756253	0.86[EUR][1000 genomes]
rs1907388	0.86[EUR][1000 genomes]
rs2065689	0.92[CHB][hapmap]
rs2242356	0.86[EUR][1000 genomes]
rs3737184	0.92[CHB][hapmap]
rs57812861	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7077784	0.92[CHB][hapmap]
rs72629761	0.86[EUR][1000 genomes]
rs72629762	0.86[EUR][1000 genomes]
rs72629763	0.86[EUR][1000 genomes]
rs72629764	0.86[EUR][1000 genomes]
rs72629766	1.00[EUR][1000 genomes]
rs72629767	1.00[EUR][1000 genomes]
rs72629772	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629774	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629775	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629777	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629778	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72631837	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72631838	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72631839	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72631840	0.81[ASN][1000 genomes]
rs7358151	1.00[CHB][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912702	0.83[GIH][hapmap];0.80[JPT][hapmap]
rs8181307	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952404	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28004800-28014800	Weak transcription	Aorta	Aorta
2	chr10:28007200-28016000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:28011000-28013600	Enhancers	NHDF-Ad	bronchial
4	chr10:28011200-28013400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:28011400-28013400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:28011400-28013400	Enhancers	HSMMtube	muscle
7	chr10:28011800-28013600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:28012000-28014800	Enhancers	Osteobl	bone
9	chr10:28012200-28013400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:28012200-28013400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:28012400-28013600	Enhancers	Fetal Muscle Leg	muscle
12	chr10:28012400-28016200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:28012600-28013400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr10:28012600-28013400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:28012600-28013400	Enhancers	Rectal Smooth Muscle	rectum
16	chr10:28012600-28013400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:28012800-28014800	Weak transcription	Ovary	ovary
18	chr10:28012800-28020000	Weak transcription	Fetal Stomach	stomach
19	chr10:28013000-28014000	Enhancers	Stomach Smooth Muscle	stomach
20	chr10:28013000-28014600	Weak transcription	Colon Smooth Muscle	Colon
21	chr10:28013200-28013400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:28013200-28014400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr10:28013200-28014400	Enhancers	Monocytes-CD14+_RO01746	blood

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