Variant report

Variant	rs11006728
Chromosome Location	chr10:28108052-28108053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28101558..28104290-chr10:28106943..28109516,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169126	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10430558	0.92[CHB][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10430568	0.92[CHB][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10826346	0.92[CHB][hapmap]
rs10826349	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11006694	0.92[CHB][hapmap]
rs11006703	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11006704	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11006705	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11006707	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11006708	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11006714	0.91[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11006715	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11006717	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11006719	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11006720	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11006723	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11006725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006733	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015948	0.82[CHB][hapmap]
rs11015980	1.00[CHB][hapmap]
rs11015981	0.92[CHB][hapmap]
rs12218027	0.92[CHB][hapmap]
rs12264856	0.91[CHB][hapmap]
rs17830607	1.00[AFR][1000 genomes]
rs2065689	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs35242712	1.00[AFR][1000 genomes]
rs35472668	1.00[AFR][1000 genomes]
rs3737184	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077784	1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs72631840	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72631841	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72631842	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72631843	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72631844	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72631845	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7358151	0.91[CHB][hapmap]
rs7899995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8181307	0.92[CHB][hapmap]
rs952404	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28105600-28127600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:28108000-28109400	Enhancers	Ovary	ovary

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