Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28108136..28110708-chr10:28110807..28112653,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10430558	0.92[CHB][hapmap]
rs10430568	0.92[CHB][hapmap]
rs10826346	0.92[CHB][hapmap]
rs10826349	0.99[ASN][1000 genomes]
rs11006694	0.92[CHB][hapmap]
rs11006714	0.92[CHB][hapmap]
rs11006717	0.85[ASN][1000 genomes]
rs11006725	0.90[ASN][1000 genomes]
rs11006728	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs11006730	1.00[CEU][hapmap]
rs11006733	0.86[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs11015948	0.84[CHB][hapmap]
rs11015980	1.00[CHB][hapmap]
rs11015981	0.92[CHB][hapmap]
rs12218027	0.92[CHB][hapmap]
rs12249609	1.00[CEU][hapmap]
rs12264704	1.00[CEU][hapmap]
rs12264856	0.92[CHB][hapmap]
rs3737184	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs7071046	0.85[ASN][1000 genomes]
rs7077784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72631844	0.88[ASN][1000 genomes]
rs72631845	0.95[ASN][1000 genomes]
rs7358151	0.92[CHB][hapmap]
rs7899995	0.90[ASN][1000 genomes]
rs8181307	0.92[CHB][hapmap]
rs952404	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28105600-28127600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:28109400-28111000	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:28109400-28111200	Weak transcription	Fetal Stomach	stomach
4	chr10:28109400-28111200	Weak transcription	Ovary	ovary
5	chr10:28110000-28110800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:28110000-28111000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:28110000-28111000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:28110000-28111400	Weak transcription	Left Ventricle	heart
9	chr10:28110000-28111600	Weak transcription	Aorta	Aorta
10	chr10:28110000-28113200	Weak transcription	Pancreas	Pancrea
11	chr10:28110200-28111600	Weak transcription	Skeletal Muscle Male	skeletal muscle

Quick Search: