Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28101558..28104290-chr10:28106943..28109516,2	MCF-7	breast:
2	chr10:28108136..28110708-chr10:28110807..28112653,2	K562	blood:

Variant related genes	Relation type
ENSG00000169126	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10430558	0.93[CHB][hapmap]
rs10430568	0.93[CHB][hapmap]
rs10826346	0.93[CHB][hapmap]
rs10826349	1.00[ASN][1000 genomes]
rs11006694	0.93[CHB][hapmap]
rs11006714	0.92[CHB][hapmap]
rs11006717	0.86[ASN][1000 genomes]
rs11006725	0.91[ASN][1000 genomes]
rs11006728	1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs11006730	1.00[CEU][hapmap]
rs11006733	0.87[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs11015948	0.84[CHB][hapmap]
rs11015980	1.00[CHB][hapmap]
rs11015981	0.93[CHB][hapmap]
rs12218027	0.93[CHB][hapmap]
rs12249609	1.00[CEU][hapmap]
rs12264704	1.00[CEU][hapmap]
rs12264856	0.92[CHB][hapmap]
rs2065689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3737184	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7071046	0.86[ASN][1000 genomes]
rs72631844	0.87[ASN][1000 genomes]
rs72631845	0.94[ASN][1000 genomes]
rs7358151	0.92[CHB][hapmap]
rs7899995	0.91[ASN][1000 genomes]
rs8181307	0.93[CHB][hapmap]
rs952404	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28105600-28127600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:28108000-28109400	Enhancers	Ovary	ovary

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