Variant report

Variant	rs7358151
Chromosome Location	chr10:28017572-28017573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28016537..28019531-chr10:28020937..28024001,3	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1002861	0.86[EUR][1000 genomes]
rs1027342	0.86[EUR][1000 genomes]
rs10430558	1.00[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs10430568	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10508722	0.86[EUR][1000 genomes]
rs1055192	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10764718	0.86[EUR][1000 genomes]
rs10764719	0.86[EUR][1000 genomes]
rs10826346	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10829285	0.86[EUR][1000 genomes]
rs10829286	0.86[EUR][1000 genomes]
rs10829294	0.86[EUR][1000 genomes]
rs10829296	0.86[EUR][1000 genomes]
rs10829302	0.86[EUR][1000 genomes]
rs10829304	0.86[EUR][1000 genomes]
rs10829305	0.86[EUR][1000 genomes]
rs11006694	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11006697	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11006698	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11006699	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11006700	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11006703	0.81[ASN][1000 genomes]
rs11006704	0.81[ASN][1000 genomes]
rs11006705	0.81[ASN][1000 genomes]
rs11006707	0.81[ASN][1000 genomes]
rs11006708	0.80[ASN][1000 genomes]
rs11006714	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs11006728	0.91[CHB][hapmap]
rs11015898	0.86[EUR][1000 genomes]
rs11015923	0.86[EUR][1000 genomes]
rs11015927	0.86[EUR][1000 genomes]
rs11015928	0.86[EUR][1000 genomes]
rs11015936	0.86[EUR][1000 genomes]
rs11015938	0.86[EUR][1000 genomes]
rs11015946	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015948	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015949	0.87[JPT][hapmap]
rs11015950	0.86[JPT][hapmap]
rs11015951	0.85[GIH][hapmap];0.87[JPT][hapmap]
rs11015952	0.85[GIH][hapmap];0.87[JPT][hapmap]
rs11015953	0.85[GIH][hapmap];0.87[JPT][hapmap]
rs11015954	0.85[JPT][hapmap]
rs11015957	0.86[EUR][1000 genomes]
rs11015958	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015969	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015973	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015980	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12217955	0.86[EUR][1000 genomes]
rs12218027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12219955	0.86[EUR][1000 genomes]
rs12220217	0.86[EUR][1000 genomes]
rs12257550	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264856	1.00[CHB][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12569521	0.86[EUR][1000 genomes]
rs12572531	0.86[EUR][1000 genomes]
rs1907388	1.00[EUR][1000 genomes]
rs1907393	0.86[JPT][hapmap]
rs2065689	0.92[CHB][hapmap]
rs2225713	1.00[TSI][hapmap]
rs3737184	0.92[CHB][hapmap]
rs57812861	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7077315	1.00[TSI][hapmap]
rs7077784	0.92[CHB][hapmap]
rs7100957	1.00[TSI][hapmap]
rs72629766	0.86[EUR][1000 genomes]
rs72629767	0.86[EUR][1000 genomes]
rs72629772	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629774	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629775	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629776	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629777	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629778	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72631837	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72631838	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72631839	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72631840	0.81[ASN][1000 genomes]
rs7358288	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs7893159	1.00[TSI][hapmap]
rs7898679	0.84[JPT][hapmap]
rs7912702	0.83[GIH][hapmap];0.87[JPT][hapmap]
rs8181307	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952404	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28012800-28020000	Weak transcription	Fetal Stomach	stomach
2	chr10:28013400-28020400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:28014000-28017600	Active TSS	Stomach Smooth Muscle	stomach
4	chr10:28015800-28017600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:28016000-28017600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:28016600-28017600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:28016600-28024000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:28016800-28017600	Active TSS	Aorta	Aorta
9	chr10:28016800-28017600	Flanking Active TSS	Osteobl	bone
10	chr10:28016800-28018000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:28017000-28017600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:28017000-28017600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:28017200-28020400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:28017400-28017800	Flanking Active TSS	Ovary	ovary
15	chr10:28017400-28020000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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