Variant report

Variant	rs7893159
Chromosome Location	chr10:28146521-28146522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11006714	1.00[TSI][hapmap]
rs11814132	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11818080	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818106	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16927673	1.00[EUR][1000 genomes]
rs1907381	1.00[EUR][1000 genomes]
rs2225713	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28398887	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28776270	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34439626	1.00[EUR][1000 genomes]
rs56086075	1.00[EUR][1000 genomes]
rs56335062	1.00[EUR][1000 genomes]
rs56352562	1.00[EUR][1000 genomes]
rs57643587	1.00[EUR][1000 genomes]
rs58628171	1.00[EUR][1000 genomes]
rs58720058	1.00[EUR][1000 genomes]
rs59271137	1.00[EUR][1000 genomes]
rs59540473	1.00[EUR][1000 genomes]
rs59741264	1.00[EUR][1000 genomes]
rs60814150	1.00[EUR][1000 genomes]
rs61344519	1.00[EUR][1000 genomes]
rs61476792	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7071799	1.00[EUR][1000 genomes]
rs7072445	1.00[EUR][1000 genomes]
rs7074114	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7077315	1.00[TSI][hapmap]
rs7078174	1.00[EUR][1000 genomes]
rs7078969	1.00[EUR][1000 genomes]
rs7093804	1.00[EUR][1000 genomes]
rs7097374	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7100534	1.00[EUR][1000 genomes]
rs7100957	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7358151	1.00[TSI][hapmap]
rs73604081	1.00[EUR][1000 genomes]
rs74127112	1.00[EUR][1000 genomes]
rs74127134	1.00[EUR][1000 genomes]
rs74127135	1.00[EUR][1000 genomes]
rs74127138	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127139	1.00[EUR][1000 genomes]
rs74127142	1.00[EUR][1000 genomes]
rs74127147	1.00[EUR][1000 genomes]
rs74127152	1.00[EUR][1000 genomes]
rs74127165	1.00[EUR][1000 genomes]
rs74127175	1.00[EUR][1000 genomes]
rs7895005	1.00[EUR][1000 genomes]
rs7895017	1.00[EUR][1000 genomes]
rs7899126	1.00[EUR][1000 genomes]
rs7910182	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv550283	chr10:28144330-28167326	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28121000-28158600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28141200-28153800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:28144800-28152600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:28145000-28146600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:28146200-28147200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:28146400-28146800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:28146400-28146800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:28146400-28146800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr10:28146400-28147000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr10:28146400-28147000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:28146400-28147000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:28146400-28147000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr10:28146400-28147200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr10:28146400-28147400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr10:28146400-28147400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr10:28146400-28147600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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