Variant report

Variant	rs74127175
Chromosome Location	chr10:28286262-28286263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11006838	1.00[EUR][1000 genomes]
rs11814132	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818080	1.00[EUR][1000 genomes]
rs11818106	1.00[EUR][1000 genomes]
rs16927673	1.00[EUR][1000 genomes]
rs2225713	1.00[EUR][1000 genomes]
rs28398887	1.00[EUR][1000 genomes]
rs28776270	1.00[EUR][1000 genomes]
rs56086075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56335062	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56352562	1.00[EUR][1000 genomes]
rs57130444	1.00[EUR][1000 genomes]
rs57643587	1.00[EUR][1000 genomes]
rs58628171	1.00[EUR][1000 genomes]
rs58720058	1.00[EUR][1000 genomes]
rs59051253	1.00[EUR][1000 genomes]
rs59271137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59540473	1.00[EUR][1000 genomes]
rs59741264	1.00[EUR][1000 genomes]
rs60814150	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61344519	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61345755	1.00[EUR][1000 genomes]
rs61476792	1.00[EUR][1000 genomes]
rs61610224	1.00[EUR][1000 genomes]
rs7071799	1.00[EUR][1000 genomes]
rs7072445	1.00[EUR][1000 genomes]
rs7074114	1.00[EUR][1000 genomes]
rs7078174	1.00[EUR][1000 genomes]
rs7078969	1.00[EUR][1000 genomes]
rs7081199	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7093804	1.00[EUR][1000 genomes]
rs7097374	1.00[EUR][1000 genomes]
rs7100534	1.00[EUR][1000 genomes]
rs7100957	1.00[EUR][1000 genomes]
rs73604081	1.00[EUR][1000 genomes]
rs74127112	1.00[EUR][1000 genomes]
rs74127134	1.00[EUR][1000 genomes]
rs74127135	1.00[EUR][1000 genomes]
rs74127138	1.00[EUR][1000 genomes]
rs74127139	1.00[EUR][1000 genomes]
rs74127142	1.00[EUR][1000 genomes]
rs74127147	1.00[EUR][1000 genomes]
rs74127152	1.00[EUR][1000 genomes]
rs74127165	1.00[EUR][1000 genomes]
rs7893159	1.00[EUR][1000 genomes]
rs7895005	1.00[EUR][1000 genomes]
rs7895017	1.00[EUR][1000 genomes]
rs7899126	1.00[EUR][1000 genomes]
rs7910182	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831815	chr10:28235661-28407533	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1052182	chr10:28259142-28361830	Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28239800-28287200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28283800-28286600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:28283800-28286600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:28284400-28286800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:28284400-28286800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:28284600-28286800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:28284800-28286400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:28285000-28286400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:28285400-28286800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:28285800-28286800	Weak transcription	Fetal Lung	lung
11	chr10:28286000-28286400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr10:28286200-28286600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:28286200-28286600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr10:28286200-28286600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr10:28286200-28286600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr10:28286200-28286600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr10:28286200-28288000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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