Variant report

Variant	rs11006838
Chromosome Location	chr10:28361830-28361831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11006846	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11006849	0.86[YRI][hapmap];0.90[AFR][1000 genomes]
rs11006853	0.86[ASW][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes]
rs11814132	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11818080	1.00[EUR][1000 genomes]
rs11818106	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12243362	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252839	0.88[AFR][1000 genomes]
rs16927673	1.00[EUR][1000 genomes]
rs56086075	1.00[EUR][1000 genomes]
rs56335062	1.00[EUR][1000 genomes]
rs57130444	1.00[EUR][1000 genomes]
rs57643587	1.00[EUR][1000 genomes]
rs58628171	1.00[EUR][1000 genomes]
rs59051253	1.00[EUR][1000 genomes]
rs59271137	1.00[EUR][1000 genomes]
rs59741264	1.00[EUR][1000 genomes]
rs60814150	1.00[EUR][1000 genomes]
rs61344519	1.00[EUR][1000 genomes]
rs61345755	1.00[EUR][1000 genomes]
rs61610224	1.00[EUR][1000 genomes]
rs7072445	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7078969	1.00[EUR][1000 genomes]
rs7093804	1.00[EUR][1000 genomes]
rs7097374	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7100957	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs74127138	1.00[EUR][1000 genomes]
rs74127139	1.00[EUR][1000 genomes]
rs74127142	1.00[EUR][1000 genomes]
rs74127147	1.00[EUR][1000 genomes]
rs74127152	1.00[EUR][1000 genomes]
rs74127165	1.00[EUR][1000 genomes]
rs74127175	1.00[EUR][1000 genomes]
rs7895017	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv831815	chr10:28235661-28407533	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1052182	chr10:28259142-28361830	Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1042524	chr10:28290149-28506812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv831816	chr10:28304698-28493635	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv894988	chr10:28337570-28410989	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv466855	chr10:28341783-28400835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv550284	chr10:28341783-28400835	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28341200-28377600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:28344600-28364400	Weak transcription	Fetal Heart	heart
3	chr10:28346200-28375400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:28346600-28364400	Weak transcription	HepG2	liver
5	chr10:28347000-28363800	Weak transcription	Fetal Stomach	stomach
6	chr10:28347000-28364000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:28347000-28364000	Weak transcription	Pancreas	Pancrea
8	chr10:28347000-28364200	Weak transcription	Esophagus	oesophagus
9	chr10:28347000-28364600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:28347000-28375200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:28347000-28380400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:28347000-28381000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr10:28347000-28412200	Weak transcription	Left Ventricle	heart
14	chr10:28347000-28414600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:28347200-28364000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:28347400-28364200	Weak transcription	Fetal Intestine Large	intestine
17	chr10:28347400-28374600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:28347400-28377000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr10:28347400-28377200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:28347600-28364200	Weak transcription	Primary B cells from cord blood	blood
21	chr10:28348000-28381200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:28348200-28364200	Weak transcription	Fetal Intestine Small	intestine
23	chr10:28348200-28365200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr10:28349400-28376600	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:28349600-28364200	Weak transcription	HSMM	muscle
26	chr10:28349800-28364200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:28349800-28364400	Weak transcription	Gastric	stomach
28	chr10:28355600-28364000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr10:28356000-28364000	Weak transcription	HSMMtube	muscle
30	chr10:28356000-28364200	Weak transcription	Adipose Nuclei	Adipose
31	chr10:28356200-28364000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:28356200-28364000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr10:28356200-28364400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:28356200-28366200	Weak transcription	Brain Angular Gyrus	brain
35	chr10:28356600-28363600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:28356600-28364200	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr10:28356800-28364200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:28357200-28380200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr10:28357800-28367200	Strong transcription	Primary T cells from cord blood	blood
40	chr10:28358000-28366000	Weak transcription	Psoas Muscle	Psoas
41	chr10:28358800-28366800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:28360200-28362000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr10:28360200-28364000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr10:28360200-28364400	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr10:28360400-28364400	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr10:28360800-28362000	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr10:28360800-28366400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:28361000-28364200	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr10:28361200-28362200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:28361200-28362200	Enhancers	Hela-S3	cervix

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