Variant report

Variant	rs7072445
Chromosome Location	chr10:28171947-28171948
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11006838	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs11814132	1.00[EUR][1000 genomes]
rs11818080	1.00[EUR][1000 genomes]
rs11818106	1.00[EUR][1000 genomes]
rs16927673	1.00[EUR][1000 genomes]
rs1907381	1.00[EUR][1000 genomes]
rs2225713	1.00[EUR][1000 genomes]
rs28398887	1.00[EUR][1000 genomes]
rs28776270	1.00[EUR][1000 genomes]
rs34439626	1.00[EUR][1000 genomes]
rs56086075	1.00[EUR][1000 genomes]
rs56335062	1.00[EUR][1000 genomes]
rs56352562	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57643587	1.00[EUR][1000 genomes]
rs58628171	1.00[EUR][1000 genomes]
rs58720058	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59271137	1.00[EUR][1000 genomes]
rs59540473	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59741264	1.00[EUR][1000 genomes]
rs60814150	1.00[EUR][1000 genomes]
rs61344519	1.00[EUR][1000 genomes]
rs61476792	1.00[EUR][1000 genomes]
rs7071799	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7074114	1.00[EUR][1000 genomes]
rs7077315	1.00[MEX][hapmap]
rs7078174	1.00[EUR][1000 genomes]
rs7078969	1.00[EUR][1000 genomes]
rs7093804	1.00[EUR][1000 genomes]
rs7097374	1.00[EUR][1000 genomes]
rs7100534	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7100957	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs73604081	1.00[EUR][1000 genomes]
rs74127112	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127138	1.00[EUR][1000 genomes]
rs74127139	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127142	1.00[EUR][1000 genomes]
rs74127147	1.00[EUR][1000 genomes]
rs74127152	1.00[EUR][1000 genomes]
rs74127165	1.00[EUR][1000 genomes]
rs74127175	1.00[EUR][1000 genomes]
rs7893159	1.00[EUR][1000 genomes]
rs7895005	1.00[EUR][1000 genomes]
rs7895017	1.00[EUR][1000 genomes]
rs7899126	1.00[EUR][1000 genomes]
rs7910182	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28161000-28181800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28171200-28172200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:28171600-28172200	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links