Variant report
| Variant | rs1907381 |
|---|---|
| Chromosome Location | chr10:28039371-28039372 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs11818080 | 1.00[EUR][1000 genomes] |
| rs2225713 | 1.00[EUR][1000 genomes] |
| rs28398887 | 1.00[EUR][1000 genomes] |
| rs28776270 | 1.00[EUR][1000 genomes] |
| rs34439626 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56352562 | 1.00[EUR][1000 genomes] |
| rs57643587 | 1.00[EUR][1000 genomes] |
| rs58628171 | 1.00[EUR][1000 genomes] |
| rs58720058 | 1.00[EUR][1000 genomes] |
| rs59540473 | 1.00[EUR][1000 genomes] |
| rs59741264 | 1.00[EUR][1000 genomes] |
| rs61476792 | 1.00[EUR][1000 genomes] |
| rs7071799 | 1.00[EUR][1000 genomes] |
| rs7072445 | 1.00[EUR][1000 genomes] |
| rs7074114 | 1.00[EUR][1000 genomes] |
| rs7078174 | 1.00[EUR][1000 genomes] |
| rs7093804 | 1.00[EUR][1000 genomes] |
| rs7097374 | 1.00[EUR][1000 genomes] |
| rs7100534 | 1.00[EUR][1000 genomes] |
| rs7100957 | 1.00[EUR][1000 genomes] |
| rs73604081 | 1.00[EUR][1000 genomes] |
| rs74127112 | 1.00[EUR][1000 genomes] |
| rs74127134 | 1.00[EUR][1000 genomes] |
| rs74127135 | 1.00[EUR][1000 genomes] |
| rs74127138 | 1.00[EUR][1000 genomes] |
| rs74127139 | 1.00[EUR][1000 genomes] |
| rs74127142 | 1.00[EUR][1000 genomes] |
| rs74127147 | 1.00[EUR][1000 genomes] |
| rs74127152 | 1.00[EUR][1000 genomes] |
| rs74127165 | 1.00[EUR][1000 genomes] |
| rs7893159 | 1.00[EUR][1000 genomes] |
| rs7895005 | 1.00[EUR][1000 genomes] |
| rs7895017 | 1.00[EUR][1000 genomes] |
| rs7899126 | 1.00[EUR][1000 genomes] |
| rs7910182 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3368825 | chr10:27864181-28043820 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv831813 | chr10:28017606-28200651 | Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv917149 | chr10:28018919-28688694 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:28035800-28063200 | Weak transcription | Aorta | Aorta |
