Variant report

Variant	rs12257550
Chromosome Location	chr10:28012091-28012092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1002861	0.86[EUR][1000 genomes]
rs1027342	0.86[EUR][1000 genomes]
rs10430558	0.81[ASN][1000 genomes]
rs10430568	0.81[ASN][1000 genomes]
rs10508722	0.86[EUR][1000 genomes]
rs1055192	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10764718	0.86[EUR][1000 genomes]
rs10764719	0.86[EUR][1000 genomes]
rs10826346	0.93[ASN][1000 genomes]
rs10829285	0.86[EUR][1000 genomes]
rs10829286	0.86[EUR][1000 genomes]
rs10829294	0.86[EUR][1000 genomes]
rs10829296	0.86[EUR][1000 genomes]
rs10829302	0.86[EUR][1000 genomes]
rs10829304	0.86[EUR][1000 genomes]
rs10829305	0.86[EUR][1000 genomes]
rs11006694	0.96[YRI][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11006697	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11006698	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11006699	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11006700	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11006703	0.81[ASN][1000 genomes]
rs11006704	0.81[ASN][1000 genomes]
rs11006705	0.81[ASN][1000 genomes]
rs11006707	0.81[ASN][1000 genomes]
rs11006708	0.80[ASN][1000 genomes]
rs11015898	0.86[EUR][1000 genomes]
rs11015923	0.86[EUR][1000 genomes]
rs11015927	0.86[EUR][1000 genomes]
rs11015928	0.86[EUR][1000 genomes]
rs11015936	0.86[EUR][1000 genomes]
rs11015938	0.86[EUR][1000 genomes]
rs11015946	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015948	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015957	0.86[EUR][1000 genomes]
rs11015958	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015969	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015973	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015980	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11015981	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12217955	0.86[EUR][1000 genomes]
rs12218027	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12219955	0.86[EUR][1000 genomes]
rs12220217	0.86[EUR][1000 genomes]
rs12264856	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12569521	0.86[EUR][1000 genomes]
rs12572531	0.86[EUR][1000 genomes]
rs1907388	1.00[EUR][1000 genomes]
rs57812861	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72629766	0.86[EUR][1000 genomes]
rs72629767	0.86[EUR][1000 genomes]
rs72629772	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629774	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72629775	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72629776	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629777	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72629778	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72631837	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72631838	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72631839	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72631840	0.81[ASN][1000 genomes]
rs7358151	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358288	0.95[YRI][hapmap];0.90[AFR][1000 genomes]
rs8181307	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28004800-28014800	Weak transcription	Aorta	Aorta
2	chr10:28007200-28016000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:28011000-28012400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:28011000-28013600	Enhancers	NHDF-Ad	bronchial
5	chr10:28011200-28012400	Enhancers	Stomach Smooth Muscle	stomach
6	chr10:28011200-28013400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:28011400-28012400	Weak transcription	Fetal Stomach	stomach
8	chr10:28011400-28012800	Enhancers	Ovary	ovary
9	chr10:28011400-28013400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:28011400-28013400	Enhancers	HSMMtube	muscle
11	chr10:28011800-28013200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:28011800-28013600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:28012000-28014800	Enhancers	Osteobl	bone

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