Variant report

Variant	rs35242712
Chromosome Location	chr10:28224075-28224076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28222012..28225002-chr17:57922450..57924037,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11006708	1.00[AFR][1000 genomes]
rs11006714	1.00[AFR][1000 genomes]
rs11006715	1.00[AFR][1000 genomes]
rs11006717	1.00[AFR][1000 genomes]
rs11006720	1.00[AFR][1000 genomes]
rs11006723	1.00[AFR][1000 genomes]
rs11006725	1.00[AFR][1000 genomes]
rs11006728	1.00[AFR][1000 genomes]
rs11006733	1.00[AFR][1000 genomes]
rs11815183	0.88[ASN][1000 genomes]
rs17830607	1.00[AFR][1000 genomes]
rs35472668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737184	1.00[AFR][1000 genomes]
rs41283706	0.99[ASN][1000 genomes]
rs4367844	0.87[ASN][1000 genomes]
rs57483828	0.88[ASN][1000 genomes]
rs58716372	0.88[ASN][1000 genomes]
rs59247264	0.87[ASN][1000 genomes]
rs59329138	0.87[ASN][1000 genomes]
rs60695014	0.88[ASN][1000 genomes]
rs60695807	0.88[ASN][1000 genomes]
rs61049661	0.88[ASN][1000 genomes]
rs61456649	0.88[ASN][1000 genomes]
rs6481492	0.87[ASN][1000 genomes]
rs6481493	0.88[ASN][1000 genomes]
rs6481494	0.88[ASN][1000 genomes]
rs6481496	0.92[ASN][1000 genomes]
rs7071570	0.97[ASN][1000 genomes]
rs7073702	0.88[ASN][1000 genomes]
rs7094524	0.89[ASN][1000 genomes]
rs72631840	1.00[AFR][1000 genomes]
rs72631841	1.00[AFR][1000 genomes]
rs72631842	1.00[AFR][1000 genomes]
rs72631843	1.00[AFR][1000 genomes]
rs73604102	0.88[ASN][1000 genomes]
rs73606005	0.88[ASN][1000 genomes]
rs73606007	0.88[ASN][1000 genomes]
rs73606008	0.88[ASN][1000 genomes]
rs7896625	0.88[ASN][1000 genomes]
rs7899995	1.00[AFR][1000 genomes]
rs7907231	0.88[ASN][1000 genomes]
rs7908757	0.88[ASN][1000 genomes]
rs7922435	0.88[ASN][1000 genomes]
rs952404	1.00[AFR][1000 genomes]
rs983258	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28217000-28225200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:28217200-28231000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:28221800-28224200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:28222000-28224400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:28223600-28224200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:28223800-28224200	ZNF genes & repeats	Ovary	ovary
7	chr10:28223800-28238400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:28224000-28227600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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