Variant report

Variant	rs72629758
Chromosome Location	chr10:27789256-27789257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27788720..27791129-chr10:27796787..27799412,2	K562	blood:
2	chr10:27769453..27771996-chr10:27788773..27790956,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10082387	0.97[ASN][1000 genomes]
rs10128112	0.91[ASN][1000 genomes]
rs10508724	0.81[ASN][1000 genomes]
rs10764695	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10764696	0.91[ASN][1000 genomes]
rs10764697	0.91[ASN][1000 genomes]
rs10764699	0.95[ASN][1000 genomes]
rs10829261	0.91[ASN][1000 genomes]
rs11015807	0.95[ASN][1000 genomes]
rs11015810	0.95[ASN][1000 genomes]
rs11015812	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11015815	0.99[ASN][1000 genomes]
rs11015816	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11015817	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11015823	0.91[ASN][1000 genomes]
rs11015826	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11015832	0.88[ASN][1000 genomes]
rs11015833	0.88[ASN][1000 genomes]
rs11015840	0.88[ASN][1000 genomes]
rs11015856	0.81[ASN][1000 genomes]
rs11015858	0.81[ASN][1000 genomes]
rs12218420	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12220463	0.83[ASN][1000 genomes]
rs12263006	0.91[ASN][1000 genomes]
rs12569737	0.92[ASN][1000 genomes]
rs12571836	0.81[ASN][1000 genomes]
rs12571985	0.91[ASN][1000 genomes]
rs12573111	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17756134	0.88[ASN][1000 genomes]
rs17756253	0.81[ASN][1000 genomes]
rs1886402	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2242356	0.83[ASN][1000 genomes]
rs3765133	0.82[ASN][1000 genomes]
rs4237384	0.91[ASN][1000 genomes]
rs4345873	0.91[ASN][1000 genomes]
rs4514312	0.91[ASN][1000 genomes]
rs4634991	0.90[ASN][1000 genomes]
rs61226328	0.99[ASN][1000 genomes]
rs72629756	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72629757	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72629759	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72629760	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72629761	0.81[ASN][1000 genomes]
rs7475332	0.86[ASN][1000 genomes]
rs9971075	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27789000-27789400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:27789200-27789400	Enhancers	NHEK	skin
3	chr10:27789200-27789600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:27789200-27790800	Enhancers	HMEC	breast
5	chr10:27789200-27791000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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