Variant report

Variant	rs11015833
Chromosome Location	chr10:27802927-27802928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27792256..27797108-chr10:27801373..27804579,5	MCF-7	breast:
2	chr10:27802552..27806516-chr10:27806924..27811120,4	K562	blood:
3	chr10:27802914..27806574-chr10:27810162..27816250,5	MCF-7	breast:
4	chr10:27792936..27797096-chr10:27798053..27803515,8	K562	blood:
5	chr10:27793040..27797824-chr10:27798182..27803783,7	K562	blood:
6	chr10:27800400..27804352-chr10:27805860..27809285,4	K562	blood:

Variant related genes	Relation type
ENSG00000099246	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1002861	0.86[EUR][1000 genomes]
rs10082387	0.85[ASN][1000 genomes]
rs1027342	0.86[EUR][1000 genomes]
rs10508722	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10508724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10764695	0.86[ASN][1000 genomes]
rs10764699	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10764718	0.86[EUR][1000 genomes]
rs10764719	0.86[EUR][1000 genomes]
rs10829285	0.86[EUR][1000 genomes]
rs10829286	0.86[EUR][1000 genomes]
rs10829294	0.86[EUR][1000 genomes]
rs10829296	0.86[EUR][1000 genomes]
rs10829302	0.86[EUR][1000 genomes]
rs10829304	0.86[EUR][1000 genomes]
rs10829305	0.86[EUR][1000 genomes]
rs11015807	0.83[ASN][1000 genomes]
rs11015810	0.83[ASN][1000 genomes]
rs11015812	0.85[ASN][1000 genomes]
rs11015815	0.87[ASN][1000 genomes]
rs11015816	0.88[ASN][1000 genomes]
rs11015817	0.88[ASN][1000 genomes]
rs11015826	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11015832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015857	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11015858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015862	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11015875	1.00[EUR][1000 genomes]
rs11015898	0.86[EUR][1000 genomes]
rs11015923	0.86[EUR][1000 genomes]
rs11015927	0.86[EUR][1000 genomes]
rs11015928	0.86[EUR][1000 genomes]
rs11015936	0.86[EUR][1000 genomes]
rs11015938	0.86[EUR][1000 genomes]
rs11015946	0.86[EUR][1000 genomes]
rs11015948	0.86[EUR][1000 genomes]
rs11015957	0.86[EUR][1000 genomes]
rs12217955	0.86[EUR][1000 genomes]
rs12218420	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12219258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12219955	0.86[EUR][1000 genomes]
rs12220217	0.86[EUR][1000 genomes]
rs12220463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12411804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12569521	0.86[EUR][1000 genomes]
rs12569737	0.81[ASN][1000 genomes]
rs12571836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12572531	0.86[EUR][1000 genomes]
rs12573111	0.83[ASN][1000 genomes]
rs17756134	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17756253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1886402	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2242356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3765133	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57812861	0.86[EUR][1000 genomes]
rs61226328	0.87[ASN][1000 genomes]
rs72629756	0.83[ASN][1000 genomes]
rs72629757	0.83[ASN][1000 genomes]
rs72629758	0.88[ASN][1000 genomes]
rs72629759	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72629760	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72629761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72629762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72629763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72629764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72629766	0.86[EUR][1000 genomes]
rs72629767	0.86[EUR][1000 genomes]
rs72629772	0.86[EUR][1000 genomes]
rs72629774	0.86[EUR][1000 genomes]
rs72629775	0.86[EUR][1000 genomes]
rs72629776	0.86[EUR][1000 genomes]
rs8181307	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27794200-27803800	Weak transcription	Lung	lung
2	chr10:27794200-27806800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:27794200-27817000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:27794400-27824000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:27794400-27837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:27794800-27814200	Weak transcription	Ovary	ovary
7	chr10:27794800-27814600	Weak transcription	HSMMtube	muscle
8	chr10:27794800-27822800	Weak transcription	Colonic Mucosa	Colon
9	chr10:27794800-27823200	Weak transcription	Esophagus	oesophagus
10	chr10:27794800-27823200	Weak transcription	Spleen	Spleen
11	chr10:27795000-27806000	Weak transcription	Fetal Kidney	kidney
12	chr10:27795000-27813000	Weak transcription	Right Atrium	heart
13	chr10:27795200-27813800	Weak transcription	Fetal Brain Male	brain
14	chr10:27795200-27816800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:27795600-27814800	Weak transcription	Pancreas	Pancrea
16	chr10:27795600-27816800	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:27795800-27803000	Weak transcription	NHLF	lung
18	chr10:27795800-27803800	Weak transcription	Aorta	Aorta
19	chr10:27795800-27822600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:27795800-27832600	Weak transcription	Small Intestine	intestine
21	chr10:27796000-27814600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:27796200-27804200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:27796400-27803400	Strong transcription	Primary B cells from peripheral blood	blood
24	chr10:27796400-27805200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:27796800-27804800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr10:27798000-27804000	Strong transcription	Primary B cells from cord blood	blood
27	chr10:27798400-27804200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:27798400-27805800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr10:27798400-27807600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:27798600-27803200	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr10:27798800-27804600	Strong transcription	Fetal Intestine Large	intestine
32	chr10:27799400-27803400	Strong transcription	Fetal Muscle Trunk	muscle
33	chr10:27799400-27811200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:27799600-27813800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr10:27800000-27803000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:27800000-27803200	Strong transcription	Fetal Lung	lung
37	chr10:27800000-27804200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:27800200-27804000	Strong transcription	Fetal Muscle Leg	muscle
39	chr10:27800200-27804600	Strong transcription	Fetal Intestine Small	intestine
40	chr10:27800200-27805600	Strong transcription	Fetal Stomach	stomach
41	chr10:27800400-27803400	Strong transcription	A549	lung
42	chr10:27800400-27804200	Strong transcription	Liver	Liver
43	chr10:27800400-27806200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr10:27800800-27804000	Genic enhancers	Primary T cells fromperipheralblood	blood
45	chr10:27800800-27823200	Weak transcription	Brain Anterior Caudate	brain
46	chr10:27801000-27803000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:27801000-27812200	Weak transcription	K562	blood
48	chr10:27801000-27813400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:27801000-27813600	Weak transcription	Psoas Muscle	Psoas
50	chr10:27801000-27815200	Weak transcription	Stomach Smooth Muscle	stomach

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