Variant report

Variant	rs11015802
Chromosome Location	chr10:27755330-27755331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27746316..27747991-chr10:27755130..27757907,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10764695	0.86[EUR][1000 genomes]
rs10829259	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015787	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11015788	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015789	1.00[EUR][1000 genomes]
rs11015790	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11015795	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015797	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015800	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015803	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015804	1.00[EUR][1000 genomes]
rs11015805	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11015812	0.86[EUR][1000 genomes]
rs11015816	0.86[EUR][1000 genomes]
rs11015817	0.86[EUR][1000 genomes]
rs11015836	0.83[EUR][1000 genomes]
rs12569737	0.86[EUR][1000 genomes]
rs12571985	0.86[EUR][1000 genomes]
rs12573111	0.86[EUR][1000 genomes]
rs17829007	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28665347	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs588756	0.87[ASN][1000 genomes]
rs609313	0.86[ASN][1000 genomes]
rs636932	0.88[ASN][1000 genomes]
rs680814	0.88[ASN][1000 genomes]
rs72629756	0.86[EUR][1000 genomes]
rs765699	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv2750890	chr10:27669479-27774501	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27750400-27759400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:27752200-27755400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:27752200-27755800	Enhancers	Fetal Thymus	thymus
4	chr10:27752600-27755600	Enhancers	Thymus	Thymus
5	chr10:27752800-27755400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:27754200-27755400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:27754200-27756000	Enhancers	Primary T cells from cord blood	blood
8	chr10:27754200-27756200	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr10:27754400-27757600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr10:27754600-27756200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:27755000-27755600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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