Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27966300..27968543-chr10:27973206..27975908,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1002861	0.83[AMR][1000 genomes]
rs1027342	0.82[AMR][1000 genomes]
rs10829294	0.95[AMR][1000 genomes]
rs10829296	0.95[AMR][1000 genomes]
rs10829302	0.91[AMR][1000 genomes]
rs10829304	0.91[AMR][1000 genomes]
rs10829305	0.91[AMR][1000 genomes]
rs11015923	0.95[AMR][1000 genomes]
rs11015927	0.91[AMR][1000 genomes]
rs11015928	0.91[AMR][1000 genomes]
rs11015936	0.91[AMR][1000 genomes]
rs11015938	0.91[AMR][1000 genomes]
rs11015940	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs11015942	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015944	0.90[EUR][1000 genomes]
rs12217955	0.91[AMR][1000 genomes]
rs12219316	0.96[AMR][1000 genomes]
rs12219955	0.91[AMR][1000 genomes]
rs12220217	0.91[AMR][1000 genomes]
rs12411792	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412077	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572531	0.95[AMR][1000 genomes]
rs72629767	0.91[AMR][1000 genomes]
rs72629770	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27953600-27968800	Weak transcription	Aorta	Aorta
2	chr10:27965400-27967600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr10:27966400-27968400	Weak transcription	Fetal Stomach	stomach
4	chr10:27966400-27968600	Enhancers	Fetal Lung	lung
5	chr10:27966800-27967800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:27967000-27968800	Enhancers	Stomach Smooth Muscle	stomach
7	chr10:27967400-27967800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:27967400-27967800	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr10:27967400-27968000	Enhancers	Colon Smooth Muscle	Colon
10	chr10:27967400-27968400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:27967400-27968800	Enhancers	Ovary	ovary
12	chr10:27967400-27969400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:27967400-27969400	Enhancers	Fetal Muscle Leg	muscle
14	chr10:27967400-27969800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:27967400-27970200	Enhancers	Osteobl	bone

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