Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10829294	0.86[AMR][1000 genomes]
rs10829296	0.86[AMR][1000 genomes]
rs10829302	0.82[AMR][1000 genomes]
rs10829304	0.82[AMR][1000 genomes]
rs10829305	0.82[AMR][1000 genomes]
rs11015923	0.86[AMR][1000 genomes]
rs11015927	0.82[AMR][1000 genomes]
rs11015928	0.82[AMR][1000 genomes]
rs11015936	0.82[AMR][1000 genomes]
rs11015938	0.82[AMR][1000 genomes]
rs11015940	0.81[CHB][hapmap];0.85[ASN][1000 genomes]
rs11015944	0.90[EUR][1000 genomes]
rs12217955	0.82[AMR][1000 genomes]
rs12219316	0.87[AMR][1000 genomes]
rs12219955	0.82[AMR][1000 genomes]
rs12220217	0.82[AMR][1000 genomes]
rs12411785	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12411792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12412077	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12572531	0.86[AMR][1000 genomes]
rs72629767	0.82[AMR][1000 genomes]
rs72629770	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27968400-27971600	Enhancers	Fetal Stomach	stomach
2	chr10:27969200-27973400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:27969400-27973600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:27969400-27976400	Weak transcription	Ovary	ovary
5	chr10:27969800-27972400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:27970000-27976600	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:27970200-27976400	Weak transcription	Fetal Lung	lung
8	chr10:27970800-27971600	Enhancers	Colon Smooth Muscle	Colon
9	chr10:27971400-27971600	Enhancers	Rectal Smooth Muscle	rectum
10	chr10:27971400-27973000	Enhancers	Stomach Smooth Muscle	stomach

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