Variant report

Variant	rs72629770
Chromosome Location	chr10:27973954-27973955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11015940	0.80[ASN][1000 genomes]
rs11015942	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11015944	0.90[EUR][1000 genomes]
rs12411785	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12411792	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12412077	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27969400-27976400	Weak transcription	Ovary	ovary
2	chr10:27970000-27976600	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:27970200-27976400	Weak transcription	Fetal Lung	lung
4	chr10:27971600-27976200	Weak transcription	Fetal Stomach	stomach
5	chr10:27971600-27981600	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:27973000-27981400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:27973400-27974200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:27973600-27974200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:27973800-27974200	Active TSS	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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