Variant report

Variant	rs12219316
Chromosome Location	chr10:27956315-27956316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1027342	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10829287	0.81[EUR][1000 genomes]
rs10829294	0.91[AMR][1000 genomes]
rs10829296	0.91[AMR][1000 genomes]
rs10829302	0.96[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10829304	0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10829305	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11015923	0.91[AMR][1000 genomes]
rs11015927	0.96[AMR][1000 genomes]
rs11015928	0.96[AMR][1000 genomes]
rs11015935	0.82[ASN][1000 genomes]
rs11015936	0.96[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11015938	0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11015942	0.87[AMR][1000 genomes]
rs12217955	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12219955	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12220217	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12411785	0.96[AMR][1000 genomes]
rs12411792	0.96[AMR][1000 genomes]
rs12412077	0.91[AMR][1000 genomes]
rs12572531	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs72629767	0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv3368825	chr10:27864181-28043820	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv894985	chr10:27869503-27957785	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv894986	chr10:27904646-27957785	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27933800-27963600	Weak transcription	Ovary	ovary
2	chr10:27941600-27963600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:27953600-27968800	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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