Variant report

Variant	rs16878015
Chromosome Location	chr5:59700107-59700108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10514900	0.89[YRI][hapmap]
rs16878081	0.88[YRI][hapmap]
rs2961774	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1015381	chr5:59678425-59772485	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1034331	chr5:59678773-59773467	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59686600-59700200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:59695000-59712600	Weak transcription	Primary B cells from cord blood	blood
3	chr5:59696000-59713200	Weak transcription	Aorta	Aorta
4	chr5:59698600-59700600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr5:59699000-59701200	Enhancers	HepG2	liver
6	chr5:59699200-59700400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:59699200-59700800	Enhancers	HMEC	breast
8	chr5:59699400-59700400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr5:59699400-59700400	Enhancers	Brain Substantia Nigra	brain
10	chr5:59699600-59700400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:59699800-59700400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:59699800-59700400	Enhancers	Brain Hippocampus Middle	brain
13	chr5:59699800-59700800	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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