Variant report

Variant	rs2961774
Chromosome Location	chr5:59698880-59698881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10461373	0.87[CEU][hapmap]
rs10461452	0.87[CEU][hapmap]
rs10514890	0.87[CEU][hapmap]
rs10514891	0.87[CEU][hapmap]
rs10514892	0.87[CEU][hapmap]
rs10514895	0.87[CEU][hapmap]
rs10514896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10514900	1.00[YRI][hapmap]
rs1108977	0.98[ASN][1000 genomes]
rs12188899	0.83[ASN][1000 genomes]
rs12656836	0.87[CEU][hapmap]
rs12656871	0.87[CEU][hapmap]
rs12659623	0.87[CEU][hapmap]
rs13158573	0.85[CEU][hapmap]
rs13178509	0.86[CEU][hapmap]
rs13185075	0.87[CEU][hapmap]
rs16877859	0.85[CEU][hapmap]
rs16877926	0.87[CEU][hapmap]
rs16877953	0.87[CEU][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs16877954	0.87[CEU][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs16877976	0.87[CEU][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16878015	0.89[YRI][hapmap]
rs16878081	1.00[YRI][hapmap]
rs2961773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34000941	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34761935	0.82[ASN][1000 genomes]
rs36043303	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37686	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs37687	0.92[ASN][1000 genomes]
rs37688	0.89[ASN][1000 genomes]
rs37689	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs37692	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs37696	0.93[ASN][1000 genomes]
rs37699	0.87[ASN][1000 genomes]
rs37703	0.89[ASN][1000 genomes]
rs37704	0.93[ASN][1000 genomes]
rs37705	0.93[ASN][1000 genomes]
rs37706	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs37707	1.00[CHB][hapmap];0.80[JPT][hapmap];0.93[ASN][1000 genomes]
rs37708	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs37709	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs37761	0.90[JPT][hapmap]
rs39726	0.90[ASN][1000 genomes]
rs40218	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs40361	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs42222	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs441391	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs450407	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4700373	1.00[CEU][hapmap]
rs615429	0.91[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs702552	0.91[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7711621	1.00[CEU][hapmap]
rs7718384	0.87[CEU][hapmap]
rs789394	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1015381	chr5:59678425-59772485	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1034331	chr5:59678773-59773467	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59686600-59700200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:59695000-59712600	Weak transcription	Primary B cells from cord blood	blood
3	chr5:59696000-59713200	Weak transcription	Aorta	Aorta
4	chr5:59698600-59700600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr5:59698800-59699000	Enhancers	Stomach Smooth Muscle	stomach
6	chr5:59698800-59699400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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